Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19b08r
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 198 5e-51
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 191 7e-49
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 182 3e-46
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 145 3e-45
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 54 1e-07
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 32 0.50
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 31 0.87
02_05_0250 + 27153048-27154453,27154546-27154885 31 0.87
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 31 1.5
03_01_0578 + 4270835-4271482,4271763-4272140,4272353-4272444,427... 31 1.5
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 30 2.0
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 30 2.7
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 29 4.6
08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695 29 4.6
11_06_0437 - 23533218-23536382 29 6.1
05_01_0297 - 2314687-2316021 29 6.1
03_02_0360 - 7796799-7796816,7797477-7797587,7797760-7798068 29 6.1
08_02_0610 + 19307537-19308011,19308187-19310846 28 8.1
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 198 bits (483), Expect = 5e-51
Identities = 88/156 (56%), Positives = 121/156 (77%), Gaps = 3/156 (1%)
Frame = -3
Query: 775 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVH 599
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGHAK H
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 598 LVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP- 422
VGIDIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G+ ++DL++P
Sbjct: 61 FVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPT 120
Query: 421 DGDLGTQLRTDF-DSGKELLCTVLKSCGEECVIAVK 317
D L Q++ F + GK+++ TV+ + GEE + AVK
Sbjct: 121 DDTLTNQIKNGFGEEGKDMILTVMSAMGEEQICAVK 156
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 191 bits (465), Expect = 7e-49
Identities = 87/159 (54%), Positives = 120/159 (75%), Gaps = 6/159 (3%)
Frame = -3
Query: 775 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK----IVEMSTSKTGKHGH 611
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK +VE+STSKTGKHGH
Sbjct: 14 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKTGKHGH 73
Query: 610 AKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDL 431
AK H V IDIFNGKK EDI PS+HN DVPHV R +YQL DIS+DG+++L+ ++G+ ++DL
Sbjct: 74 AKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDL 133
Query: 430 KIP-DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 317
++P D L Q++T F GK+L+ TV+ + GEE + A+K
Sbjct: 134 RLPTDDSLLGQIKTGFGEGKDLVVTVMSAMGEEQICALK 172
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 182 bits (443), Expect = 3e-46
Identities = 88/168 (52%), Positives = 118/168 (70%), Gaps = 15/168 (8%)
Frame = -3
Query: 775 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK-------------IVEMS 638
M D E+ HFE+ D+GAS T+P Q +RKNG +++K RPCK +VE+S
Sbjct: 1323 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVS 1382
Query: 637 TSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMA 458
TSKTGKHGHAK H V IDIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+
Sbjct: 1383 TSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT 1442
Query: 457 DNGDLREDLKIP-DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 317
++G ++DL++P D L TQ++ F GK+L+ TV+ + GEE + A+K
Sbjct: 1443 ESGGTKDDLRLPSDEALLTQIKDGFAEGKDLIVTVMSAMGEEQICALK 1490
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 145 bits (351), Expect(2) = 3e-45
Identities = 64/114 (56%), Positives = 89/114 (78%), Gaps = 1/114 (0%)
Frame = -3
Query: 655 KIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDG 476
K+VE+STSKTGKHGHAK H V IDIF KK EDI PS+HN DVPHV R +YQL DIS+DG
Sbjct: 74 KVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDG 133
Query: 475 YLTLMADNGDLREDLKIP-DGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVK 317
+++L+ +NG+ ++DL++P D +L +Q++ F GK+L+ TV+ + GEE + A+K
Sbjct: 134 FVSLLTENGNTKDDLRLPTDDNLLSQIKDGFGEGKDLVVTVMSAMGEEQICALK 187
Score = 55.2 bits (127), Expect(2) = 3e-45
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = -3
Query: 775 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK 653
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCK 42
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 54.4 bits (125), Expect = 1e-07
Identities = 25/63 (39%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Frame = -3
Query: 523 HVKREDYQLTDISDDG-YLTLMADNGDLREDLKIPDGD-LGTQLRTDFDSGKELLCTVLK 350
H+ R +YQL DIS+DG +++L+ ++G+ ++DL +P D L Q++T F GK+++ TV+
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTVMS 105
Query: 349 SCG 341
+ G
Sbjct: 106 AMG 108
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 32.3 bits (70), Expect = 0.50
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -1
Query: 735 PGPQPPSPCNVRPCVKMVSLC*RVVHARLLKCPHPKPE 622
P PQPP PC PC K C + C PKP+
Sbjct: 81 PLPQPPPPCKPPPCEKPPEDC-KPKPCHCCSCEKPKPK 117
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 31.5 bits (68), Expect = 0.87
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 843 AFSVEEPVGHISFLTVVKFKTQQWVTSKTHTLRPETPGPQP-PSPCNVRPCVK 688
A +V P+G S T+ + W + H+L P P P P+P RP ++
Sbjct: 12 ALAVYVPLGTASSTTIASYLLGLWSRAHRHSLPAPAPAPAPAPAPETHRPGIR 64
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 31.5 bits (68), Expect = 0.87
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = -3
Query: 460 ADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKANTA 305
A GD DL IPD + TQ+ T+ S C V S G C AV A+ +
Sbjct: 248 ASTGDRSVDLPIPDNETNTQI-TEMRSNGAEKCDVQLSGGTLCSEAVPASNS 298
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = -3
Query: 532 DVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD 413
D P+ RE +++ ++ D Y+T D+G L ED+K+ G+
Sbjct: 38 DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKVGTGN 75
>03_01_0578 +
4270835-4271482,4271763-4272140,4272353-4272444,
4272637-4273240
Length = 573
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = -1
Query: 762 KTHTLRPETPGPQPPSPCNVRPCVKMVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLI 583
K + P TP P PP P P ++ + P K T T+ +W L
Sbjct: 277 KLYKTSPPTPTPTPPPPAMTSPPKLNLAAKPNGTSGTVTSTPTVKRRVTETV--SWDSLP 334
Query: 582 SSMVKSMKI 556
+S++KS+K+
Sbjct: 335 TSLIKSVKV 343
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = -3
Query: 814 HIIPDRC*IQNTTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMS 638
H+ +Q ++ D E H T +ATFPM L N + +GR CK V +S
Sbjct: 423 HVADPTSLVQPRSIIDREAMHRGTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSVTVS 481
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 774 WVTSKTHTLRPETPGPQPPSPCNV 703
W+T T P+ P P PP PC+V
Sbjct: 52 WLTWPPPTPLPDAPPPPPPHPCDV 75
>12_01_1024 -
10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -3
Query: 454 NGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKAN 311
N D D I G GTQ D +L +VLKS + CV A KA+
Sbjct: 730 NRDTDIDHFIELGKSGTQCSGYLDLVDDLTTSVLKSSSDTCVSAAKAS 777
>08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695
Length = 664
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 424 PDGDLGTQLRTDFDSGKELLCTVLKSCGE 338
PDGDL ++R +SGKEL L G+
Sbjct: 206 PDGDLKDKMRDAMESGKELTSNALALIGK 234
>11_06_0437 - 23533218-23536382
Length = 1054
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -3
Query: 613 HAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDG 476
HA LV + I N +K DI D+ H K+E Y+L + G
Sbjct: 179 HACRKLVDLVIKNKEKTADIENKEKKADIEHKKKEPYKLAIVGTGG 224
>05_01_0297 - 2314687-2316021
Length = 444
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = -3
Query: 499 LTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCG 341
+ D + +G L + AD D+R + DGD G +LR F S +LL V S G
Sbjct: 91 VVDCTGEGVLFVEAD-ADVRLEELEEDGDGGGELRPPFPSMDQLLLDVEGSGG 142
>03_02_0360 - 7796799-7796816,7797477-7797587,7797760-7798068
Length = 145
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 744 PETPGPQPPSPCNVRP-CVKMVSLC*RVVHARLLKCPHP 631
PE P PP C + P C + C ++ +LL+ HP
Sbjct: 8 PENESPPPPPHCWIYPECTLVTRSCCLLLRLKLLRHGHP 46
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 752 VCVFDVTHCCVLNLTTVRNDM 814
VC FD+ CC L T+ NDM
Sbjct: 836 VCHFDLRTCCALPPATLENDM 856
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,459,116
Number of Sequences: 37544
Number of extensions: 522936
Number of successful extensions: 1830
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1815
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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