Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19b04r
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...   206   4e-54
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    28   1.8  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    26   5.5  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    26   5.5  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    26   7.2  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   9.5  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   9.5  

>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score =  206 bits (502), Expect = 4e-54
 Identities = 103/228 (45%), Positives = 143/228 (62%), Gaps = 1/228 (0%)
 Frame = -2

Query: 732 LPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDI-SYPDFSAYRRKETQDPTSKAN 556
           LP +ST  +L GS+    + +   T +       +TD    PDFS Y+ K T D +    
Sbjct: 19  LPVSSTASSLKGSM----MTIPKFTSIRT-----YTDSPEMPDFSEYQTKSTGDRS---- 65

Query: 555 ETIDERQSFTYLIXXXXXXXXXXXXXXXVTHFVSSMSAAADVLALAKIEIKLAEIPEGKS 376
                 +  +Y +               V  F++S SA+ADVLA++K E+ L++IPEGK+
Sbjct: 66  ------RVISYAMVGTMGALTAAGAQATVHDFLASWSASADVLAMSKAEVDLSKIPEGKN 119

Query: 375 VTFKWRGKPLFIRHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVP 196
           +  KW+GKP+FIRHRT +EI    +V + TLRDPQ D  R Q P+WLV+IGVCTHLGCVP
Sbjct: 120 LVVKWQGKPVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMIGVCTHLGCVP 179

Query: 195 VANAGEFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPPHTFMDEGLLV 52
           +  AG++GG++CPCHGSHYD SGRIR+GPAPLNL +P +TF    +++
Sbjct: 180 IGEAGDYGGWFCPCHGSHYDISGRIRRGPAPLNLAIPAYTFEGSKIII 227


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -3

Query: 404 SWLKFQKESLSP--SNGEENHCLSVTGQQTKSRPRRLCLSTRSVTLSTTINAPKTPSGWS 231
           S+ K QKE  S   SN      L +  + T +   R+   TRS    +T   P  PSG S
Sbjct: 528 SFSKSQKEETSSNSSNSSGTRRLGLPQRATPASRERVLPYTRSQAFHSTSLPPSLPSGHS 587

Query: 230 *SAYAPT 210
            S   P+
Sbjct: 588 PSIAIPS 594


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = -2

Query: 762 TPSEKTVVLPLPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDISYPDFSAYRRKE 583
           TP +++   P+P  +       SLPI  L     T +PA    A +  S  D +    K+
Sbjct: 314 TPRKRSPSSPVPLLAKKREGSPSLPIPILPKMKDTSIPA-AEPASSTTSARDQTPSTPKD 372

Query: 582 TQDPTSKANETIDERQSFTY 523
              P S A  + +E+Q  TY
Sbjct: 373 VGSP-STAETSAEEKQMETY 391


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -2

Query: 459 VSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRHRTADEISTEKAVPV 292
           VS     ADV +L ++ + L E+P G +   +   + +F +HR  + +  E  +P+
Sbjct: 71  VSLEKREADVASLGEV-MDLEEVPRGITRQARQLNEYIFPKHRFRNHLVDEGKIPL 125


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +1

Query: 310 GRD--FVCCPVTDKQWFSSPFEGDRLSFWNFSQLDFNLG*SQNISSR 444
           GRD  ++C   + K W  S  + ++ +   FS+L   LG    I  +
Sbjct: 155 GRDLAWICFRESGKHWMVSALDAEKRAIQRFSELFSGLGLEDRIEGK 201


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 771 VVPTPSEKTVVLPLPKTSTVETLHGS 694
           ++PT +EK++ LPL   ST++T+  S
Sbjct: 715 IIPT-TEKSLYLPLRNRSTIDTISHS 739


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 213 HLGCVPVANAGEFGGYYCPCHGSHYDASGRIRKGP 109
           H  CV +A+      YYC    S  D S +++  P
Sbjct: 46  HASCVGLADKDIPESYYCEVCHSRSDVSSQVQNSP 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,253,020
Number of Sequences: 5004
Number of extensions: 65847
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)