Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19b04r
         (805 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038618-8|AAB92071.1|  276|Caenorhabditis elegans Iron-sulfur p...   246   1e-65
AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-couple...    29   3.9  
AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical...    29   3.9  
AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical...    29   3.9  
Z92817-3|CAJ43914.1|  511|Caenorhabditis elegans Hypothetical pr...    28   9.0  

>AF038618-8|AAB92071.1|  276|Caenorhabditis elegans Iron-sulfur
           protein protein 1 protein.
          Length = 276

 Score =  246 bits (603), Expect = 1e-65
 Identities = 119/217 (54%), Positives = 151/217 (69%), Gaps = 1/217 (0%)
 Frame = -2

Query: 699 GSLPIQGLKVKAGTRVPAQVRFAHTDISYPDFSAYRRKETQDPTSKANETIDERQSF-TY 523
           G +   GL VK G  V ++ R AHTD+++PD S YRR  T++    A +T D+R++  T 
Sbjct: 59  GGVFTNGLAVK-GINVTSR-RLAHTDVTFPDMSNYRRDSTKNTQVPARDTEDQRRALPTA 116

Query: 522 LIXXXXXXXXXXXXXXXVTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLF 343
           L                V   VS  + AAD  ALA IEI +A+IPEGK+ TF+WRGKP+F
Sbjct: 117 LYYGAGGVLSLWAGKEVVQTLVSYKAMAADQRALASIEINMADIPEGKTKTFEWRGKPVF 176

Query: 342 IRHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEFGGYY 163
           ++HRT  EI+ EKAVPV  LR PQHDD+R Q  +W VVIGVCTHLGCVP+A+AG++GGYY
Sbjct: 177 VKHRTKAEIAKEKAVPVADLRHPQHDDERVQKDEWSVVIGVCTHLGCVPIADAGDYGGYY 236

Query: 162 CPCHGSHYDASGRIRKGPAPLNLEVPPHTFMDEGLLV 52
           CPCHGSHYDASGRIRKGPAPLNL VP ++F D  +++
Sbjct: 237 CPCHGSHYDASGRIRKGPAPLNLHVPAYSFKDATIVI 273


>AY825249-1|AAX24101.1|  728|Caenorhabditis elegans sodium-coupled
           neutral amino acidtransporter protein.
          Length = 728

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 315 STEKAVPVDTLRDPQHDDQ-RTQNPKWLVVIGVCTHLGCVPVANAGEFGGYY 163
           STE A+ VD      +D   R +N KW+VVI  C+ L C+ +  +   G Y+
Sbjct: 472 STEIAL-VDVFCSCIYDQYPRFRNRKWIVVIAWCSVLYCIGLVFSTRAGYYW 522


>AL110485-24|CAB60372.4|  728|Caenorhabditis elegans Hypothetical
           protein Y46G5A.30 protein.
          Length = 728

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 315 STEKAVPVDTLRDPQHDDQ-RTQNPKWLVVIGVCTHLGCVPVANAGEFGGYY 163
           STE A+ VD      +D   R +N KW+VVI  C+ L C+ +  +   G Y+
Sbjct: 472 STEIAL-VDVFCSCIYDQYPRFRNRKWIVVIAWCSVLYCIGLVFSTRAGYYW 522


>AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical
           protein Y54E2A.11a protein.
          Length = 725

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -2

Query: 750 KTVVLPLPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDISYPDFSAY 595
           +TV    P  S + T+H     QG+ +  G       RFAHT++ Y DFS +
Sbjct: 207 ETVFTWSPHGSYLSTIHK----QGIILWGGKDYARAHRFAHTNVQYIDFSPW 254


>Z92817-3|CAJ43914.1|  511|Caenorhabditis elegans Hypothetical
           protein W08G11.3b protein.
          Length = 511

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 129 RKHRSGSRGRDS--SNPRIHQHWLRARIPS 212
           R+ RSGSR RDS   + ++H+H  R+R  S
Sbjct: 5   RRSRSGSRDRDSRRRHKKVHRHKRRSRTRS 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,385,477
Number of Sequences: 27780
Number of extensions: 393718
Number of successful extensions: 1116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)