Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19b04f
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0023 - 19000591-19001234,19003322-19003496 140 2e-33
04_03_0792 + 19693957-19694146,19695614-19696260 139 3e-33
04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582... 30 1.8
11_06_0546 + 24853167-24853880 29 4.2
04_03_0621 - 18102243-18104249 29 4.2
02_02_0648 - 12619468-12619874,12621432-12621512,12621607-126217... 29 4.2
06_01_0724 + 5299278-5299542,5299690-5299950,5300246-5300351,530... 28 7.3
02_05_0839 - 32113992-32114210,32114321-32114484,32114612-321147... 28 9.6
02_05_0787 - 31742685-31742702,31742703-31742744,31742993-317430... 28 9.6
>02_04_0023 - 19000591-19001234,19003322-19003496
Length = 272
Score = 140 bits (338), Expect = 2e-33
Identities = 62/124 (50%), Positives = 84/124 (67%)
Frame = +3
Query: 399 RQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKW 578
+++F Y + FV SMSA+ DVLALA +E+ L+ I G +VT KW
Sbjct: 108 KRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKW 167
Query: 579 RGKPLFIRHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAG 758
RGKP+FIR RT ++I+ +V + +LRDPQ D +R +NP+WLVVIGVCTHLGC+P+ NAG
Sbjct: 168 RGKPVFIRRRTEEDINLANSVDIGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAG 227
Query: 759 EFGG 770
+FGG
Sbjct: 228 DFGG 231
>04_03_0792 + 19693957-19694146,19695614-19696260
Length = 278
Score = 139 bits (336), Expect = 3e-33
Identities = 63/124 (50%), Positives = 83/124 (66%)
Frame = +3
Query: 399 RQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKW 578
+++F Y + FV SMSA+ DVLALA +E+ L+ I G +VT KW
Sbjct: 114 KRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKW 173
Query: 579 RGKPLFIRHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAG 758
RGKP+FIR RT D+I+ +V V +LR PQ D +R +NP+WLVVIGVCTHLGC+P+ NAG
Sbjct: 174 RGKPVFIRRRTEDDIALANSVDVGSLRHPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAG 233
Query: 759 EFGG 770
+FGG
Sbjct: 234 DFGG 237
>04_03_0052 +
10257109-10257337,10257580-10257668,10257708-10258289,
10258477-10258668,10259392-10259563,10260190-10260461,
10260682-10260801,10260912-10260968,10261631-10261831,
10262451-10262511,10262712-10263013
Length = 758
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -3
Query: 781 DSSNPPNSPALATGTHPKWVHTPITTNHL 695
D SN NS A A T + VHTP TTN +
Sbjct: 525 DRSNVNNSDATALHTQERPVHTPETTNEI 553
>11_06_0546 + 24853167-24853880
Length = 237
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 615 DEISTEKAVPVDTLRDPQHDDQ 680
DEI + P+ TL+ PQH DQ
Sbjct: 169 DEIKAHRKQPILTLKQPQHQDQ 190
>04_03_0621 - 18102243-18104249
Length = 668
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 141 VANSLKPLVVVPTPSEKTVVLPLPKTSTVETLHGSL 248
+A SL+ + + PT + + P+T+TV+T H L
Sbjct: 23 IATSLEAMTITPTKEIRVRLQQSPETATVQTTHNLL 58
>02_02_0648 -
12619468-12619874,12621432-12621512,12621607-12621716,
12621896-12622164,12622440-12622567,12622637-12622699,
12623196-12623493
Length = 451
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 544 KFQKESLSPSNGEENHCLSVTGQQTKS 624
K +KES++ +N +E HC++ G Q S
Sbjct: 18 KLKKESMARANADELHCITFRGDQPGS 44
>06_01_0724 +
5299278-5299542,5299690-5299950,5300246-5300351,
5300633-5300697,5300759-5301233,5302239-5302347,
5302432-5302710,5303025-5303231,5303319-5303468,
5304164-5304277
Length = 676
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = +1
Query: 166 WSYQHPPRKRSSCPC--QKLQLWKLCMDPCRFRV*RSKQELEYLPKYVSLILTFHTRISR 339
WS H P R +C C ++ +PC R + ++Y ++ I +R
Sbjct: 240 WSVSHDPHPRWTCKCNPSRVSFSVSNKNPCTLHQARLQNLIQYFQCPMTQIGQRKKNRNR 299
Query: 340 LTVAKKLRTRLRRPMKLLMKGN 405
T K + RR ++ L++ N
Sbjct: 300 QTCTKGMDAAGRRIVRALIRAN 321
>02_05_0839 -
32113992-32114210,32114321-32114484,32114612-32114708,
32115822-32115944,32116770-32117141
Length = 324
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 747 LRARIPSGCIRRSRPTTWGFGCVDRRAEGHGACRQAQPS 631
+ A +P+GC + RP W C A G GA P+
Sbjct: 1 MAAAVPTGCYKCGRPGHWSRDCPSEPA-GAGAASTDNPN 38
>02_05_0787 -
31742685-31742702,31742703-31742744,31742993-31743022,
31743337-31744183,31744431-31744560,31744682-31744814
Length = 399
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 99 AGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTS 221
AG L+P SS + S L +P+P T + PLP +S
Sbjct: 218 AGLLSPPAMSSAALSPMSTSSLSPLPSPMSSTALSPLPPSS 258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,383,629
Number of Sequences: 37544
Number of extensions: 482292
Number of successful extensions: 1330
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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