Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19b04f
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038618-8|AAB92071.1|  276|Caenorhabditis elegans Iron-sulfur p...   175   2e-44
Z81592-2|CAB04726.1|  407|Caenorhabditis elegans Hypothetical pr...    31   0.93 
AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical...    29   3.7  

>AF038618-8|AAB92071.1|  276|Caenorhabditis elegans Iron-sulfur
           protein protein 1 protein.
          Length = 276

 Score =  175 bits (427), Expect = 2e-44
 Identities = 89/178 (50%), Positives = 116/178 (65%), Gaps = 1/178 (0%)
 Frame = +3

Query: 240 GSLPIQGLKVKAGTRVPAQVRFAHTDISYPDFSAYRRKETQDPTSKANETIDERQSF-TY 416
           G +   GL VK G  V ++ R AHTD+++PD S YRR  T++    A +T D+R++  T 
Sbjct: 59  GGVFTNGLAVK-GINVTSR-RLAHTDVTFPDMSNYRRDSTKNTQVPARDTEDQRRALPTA 116

Query: 417 LIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLF 596
           L                    VS  + AAD  ALA IEI +A+IPEGK+ TF+WRGKP+F
Sbjct: 117 LYYGAGGVLSLWAGKEVVQTLVSYKAMAADQRALASIEINMADIPEGKTKTFEWRGKPVF 176

Query: 597 IRHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEFGG 770
           ++HRT  EI+ EKAVPV  LR PQHDD+R Q  +W VVIGVCTHLGCVP+A+AG++GG
Sbjct: 177 VKHRTKAEIAKEKAVPVADLRHPQHDDERVQKDEWSVVIGVCTHLGCVPIADAGDYGG 234


>Z81592-2|CAB04726.1|  407|Caenorhabditis elegans Hypothetical
           protein T16G1.2 protein.
          Length = 407

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = +3

Query: 18  EHQHYEK**KNNYLPIIYRNKMNSVVRAGHLAPYFKSSTQVVANSLKPLVVVPTP--SEK 191
           EH    +  +N+  P+  +    +V   G  AP    + Q+      PLV  P P  +  
Sbjct: 164 EHNSINEIRENSIQPVRPKTFFQTVTANGSNAPP-NQNAQLPLQPQPPLVFTPQPPIAPP 222

Query: 192 TVVLPLPKTSTVETLHGSLPIQGL 263
           T  +P     T++ L  SLP QG+
Sbjct: 223 TFTMPSLVPQTIQQLPSSLPQQGI 246


>AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical
           protein Y54E2A.11a protein.
          Length = 725

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 189 KTVVLPLPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDISYPDFSAY 344
           +TV    P  S + T+H     QG+ +  G       RFAHT++ Y DFS +
Sbjct: 207 ETVFTWSPHGSYLSTIHK----QGIILWGGKDYARAHRFAHTNVQYIDFSPW 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,668,358
Number of Sequences: 27780
Number of extensions: 400024
Number of successful extensions: 1183
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)