Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19b01r
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0029 - 490433-490591,490930-491019,491860-492608,492996-49...    31   0.77 
04_04_1537 - 34235360-34235486,34236107-34236234,34236344-342364...    29   3.1  
01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716...    28   5.4  
04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,134...    27   7.2  
01_06_1651 + 38909410-38909625,38909713-38910181,38910265-38910899     27   7.2  
08_02_1152 + 24720397-24720636,24720739-24720951,24721617-247216...    27   9.5  
06_03_1153 - 28047125-28047751                                         27   9.5  

>09_01_0029 -
           490433-490591,490930-491019,491860-492608,492996-493047,
           493175-493276,493363-493494,493882-494109,494172-494321
          Length = 553

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = +1

Query: 127 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGN 306
           D   G +  +D+G  D+    S  DDN+G     SG   + + DV          G G  
Sbjct: 242 DEDEGEEDDDDEGEEDDDEHRSENDDNDGAETGRSGEQADAATDVTCCKGDDTNEGIGSG 301

Query: 307 SRSNDNRSGLHG 342
            +  D+ +G +G
Sbjct: 302 GKGADDVTGCNG 313


>04_04_1537 -
           34235360-34235486,34236107-34236234,34236344-34236483,
           34236967-34237023,34237358-34237475,34237585-34237734,
           34237857-34237941,34238040-34238104,34238351-34238500,
           34238835-34238910,34239071-34239150
          Length = 391

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 421 ECRSNGNWFKDTGRSHGDQGEGNEEFHFEFLIV*IQII 534
           E  ++GN F    R+ GDQ EGNEE H ++  + +Q I
Sbjct: 17  EVSADGNCFF---RAMGDQLEGNEEEHMKYRAMIVQYI 51


>01_05_0420 +
           21969797-21970939,21971307-21971369,21971488-21971616,
           21972241-21972291,21972669-21972809,21972922-21973122,
           21973201-21973419,21973582-21973700,21973772-21973862,
           21975864-21975965,21976291-21976315,21976522-21976592
          Length = 784

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = +1

Query: 151 SNDDGLRDNGALFS---LFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSND 321
           S D G  D G  F    +  D   L  D SG N     DV++ ++   RR     S  +D
Sbjct: 268 SLDHGSLDGGGGFEEGEIEGDTQNLDADDSG-NSELQDDVELEEDFDSRRIEEDGSCGHD 326

Query: 322 NRSGLH 339
            +S LH
Sbjct: 327 LKSNLH 332


>04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,
            1342225-1342799,1343596-1343703,1345823-1346155,
            1346783-1349306
          Length = 1630

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 220  LDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSN 318
            +DFSG N  T+ D  V    +K++G  G ++ N
Sbjct: 1595 MDFSGDNIQTTLDPMVSSSNNKKKGKKGKNKKN 1627


>01_06_1651 + 38909410-38909625,38909713-38910181,38910265-38910899
          Length = 439

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 23/69 (33%), Positives = 30/69 (43%)
 Frame = +1

Query: 136 GGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRS 315
           GG  GS   G    G      D N G G +  G ++++ GD D  DE    R T  +S S
Sbjct: 214 GGGGGSTSTGGGGGGG--DSDDGNEGGGGEGKGKHKHSGGDGD-GDEGKGGRRTSPSSSS 270

Query: 316 NDNRSGLHG 342
           +   SG  G
Sbjct: 271 SATASGAAG 279


>08_02_1152 +
           24720397-24720636,24720739-24720951,24721617-24721697,
           24721781-24721867,24721970-24722065,24722179-24722232,
           24722326-24723375,24723468-24723507,24723551-24723756
          Length = 688

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +1

Query: 202 DNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNRS 330
           D + +G DFS  N     D D +D+++   GTG  S S+ +RS
Sbjct: 354 DPDDVGQDFSQDNTKVEPDPDDNDDMNVDVGTGA-SWSSVSRS 395


>06_03_1153 - 28047125-28047751
          Length = 208

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +1

Query: 256 DVDVHDELHKRRGTGGNSRSNDNRSGLHGSSHYTT 360
           DV VH   H     GG   S +   GL GSS   T
Sbjct: 142 DVTVHHHHHHYGANGGGGHSANGGGGLDGSSSIGT 176



 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 205 NNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGN 306
           N G GLD S S     GD+  +D+L+   G GGN
Sbjct: 163 NGGGGLDGSSSIGTNGGDIGGNDDLY---GGGGN 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,428,865
Number of Sequences: 37544
Number of extensions: 117482
Number of successful extensions: 473
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)