Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19a20r
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125442-11|AAD12791.1|  624|Caenorhabditis elegans Hypothetical...    29   3.2  
U39650-5|AAK39185.2|  632|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z75541-2|CAA99854.2|  301|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>AF125442-11|AAD12791.1|  624|Caenorhabditis elegans Hypothetical
           protein H04M03.1 protein.
          Length = 624

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 595 NIKSCLFIILSRYVVSIFNPRSVYWCHDVG 684
           N+ + L  ++S Y +  F+P+S  W  DVG
Sbjct: 382 NLANLLTGVISEYQIQSFDPQSTKWASDVG 411


>U39650-5|AAK39185.2|  632|Caenorhabditis elegans Hypothetical
           protein C25A11.2 protein.
          Length = 632

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 493 KSHSSKYKMYVNESXXXXXXXXXXCYDIGKEQFYNIKSCLF 615
           KSH+S++  Y+  S          C+ +   Q  N+K  LF
Sbjct: 343 KSHTSQFTFYLENSPNGYLLIAGGCFQMESRQLVNLKLTLF 383


>Z75541-2|CAA99854.2|  301|Caenorhabditis elegans Hypothetical
           protein F52B5.2 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 342 NHEKK--LLQFFECGKHSSN*KHRIVNTNTK*KRSLITKIK 458
           N EKK  +++FF+CG      K+  V TN + +R+++  +K
Sbjct: 39  NEEKKEVIIKFFKCGYGEDEIKYLDVLTNHEQRRNIVEMLK 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,070,516
Number of Sequences: 27780
Number of extensions: 303764
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)