Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19a20f
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   2.0  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    27   2.6  
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe...    26   4.6  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   6.0  
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    25   8.0  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   8.0  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    25   8.0  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    25   8.0  

>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 153 KT*KVYAFKISLIEKGIYNKHL 88
           KT +V +F  SL EKGI N+HL
Sbjct: 445 KTCQVISFLASLKEKGIQNRHL 466


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 233 EQQAEEIE-VLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFI 352
           EQ  EE+E +  S+Y+ DDN + +D    ++  +   ++++
Sbjct: 79  EQSFEELEKITASLYQPDDNLQTLDLSLAEFSLIKDAQNYL 119


>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 233

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 275 EGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPSFNLEI 412
           E DD F Q+    Y+ K M   K  + +  +G  YP  KP +  E+
Sbjct: 60  EEDDEFLQM----YRNKRMQEWKDQMSKAKFGSVYPISKPEYTAEV 101


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +2

Query: 233  EQQAEEIEVLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPS-FNLE 409
            +QQ EE+ VLK + E   N   ++ K     Y++ D   + ++   L+   +K   + L+
Sbjct: 1054 KQQKEELSVLKGVQELTIN--NLEEKV---NYLEADVKQLPKLKKELESLNDKDQLYQLQ 1108

Query: 410  IFYNQHLLATVKENILSILNTEAE 481
               N+ L A VKE + +I +   E
Sbjct: 1109 ATKNKELEAKVKECLNNIKSLTKE 1132


>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 221 SDEAEQQAEEIEVLKSIYEGDD 286
           S+EAE +  E +  KS+YE DD
Sbjct: 237 SNEAEGEDSESQTSKSLYEWDD 258


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +2

Query: 407  EIFYNQHLLATVKENILSILNTEAEQWLGCAMTYTLFECLRERVSEIL 550
            EI+   H+L+    N LSIL    + W+          C RE    +L
Sbjct: 1068 EIYLRNHILSDEMANNLSILPIRIQAWVSYDSEKVTTVCPREPFKLVL 1115


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +2

Query: 518 ECLRERVSEILAGQVEEVVSTRVEKIVIDDQ 610
           +C+   +S+IL    E+  S R++++ ++DQ
Sbjct: 583 DCITPSISKILKMVSEDAKSQRIDELSVEDQ 613


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 576 DTTSSTWPASISDTLSLRHSNSVYVMAQPSHCS 478
           D++SS+   S+SD L L   + V V  + S CS
Sbjct: 81  DSSSSSSTTSVSDMLQLDDRDKVIVSERNSMCS 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,162
Number of Sequences: 5004
Number of extensions: 48499
Number of successful extensions: 103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)