Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19a20f
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1062 - 33834305-33834694,33835190-33835333,33835466-338355...    29   2.7  
10_02_0035 - 4429737-4429781,4430769-4430890,4431000-4431297,443...    29   3.6  
02_05_0378 - 28438918-28439064,28439280-28439313,28439859-284399...    29   4.8  
12_02_0233 - 16023062-16023253,16023528-16023609,16023699-160238...    28   8.3  
09_04_0162 + 15245354-15245458,15245558-15245629,15245793-152466...    28   8.3  
01_06_1059 - 34156139-34156238,34157113-34157189,34158146-341582...    28   8.3  
01_06_0900 - 32841880-32842078,32842179-32842300,32842621-328428...    28   8.3  

>02_05_1062 -
           33834305-33834694,33835190-33835333,33835466-33835516,
           33836098-33836262,33836566-33836670,33836729-33836869
          Length = 331

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 415 LQSTLVSNSKRKHTINIEHRSGTMARLRHDVHAV*VPQGKGVRDTGWPGRGG 570
           +QS L SN    +  +I+  +GT+  LRH+     +P G G ++  WP   G
Sbjct: 94  IQSILSSNISESNFPDIKCPTGTIPILRHNSSEAHMPNG-GSQEEVWPSFSG 144


>10_02_0035 -
           4429737-4429781,4430769-4430890,4431000-4431297,
           4431644-4431682
          Length = 167

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +1

Query: 478 GTMARLRHDVHAV*VPQGKGV--RDTGWPGRGGRVHQ 582
           G  AR   D      P+G GV  R +GWPGR  R  Q
Sbjct: 49  GAAARGSSDRQGAAAPRGSGVEQRRSGWPGRQARGRQ 85


>02_05_0378 -
           28438918-28439064,28439280-28439313,28439859-28439963,
           28440402-28441558
          Length = 480

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 559 GRGGRVHQGRKNRDR*SDGN-Y*KTRKEGAAHESTEAPSVGQG*TRKGR 702
           G GGR H+ +    R  D N   + R++GA    T APS      R+GR
Sbjct: 257 GNGGRNHEAKDGPGRSEDANGTAEIREDGALMPPTRAPSSLSDTHREGR 305


>12_02_0233 -
           16023062-16023253,16023528-16023609,16023699-16023809,
           16023890-16024141,16024227-16024580,16024893-16025548,
           16025554-16026459,16026550-16026747
          Length = 916

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +2

Query: 341 KSFILEISWGLKYPTEKPSFNLEIFYNQHL----LATVKENILSI 463
           + F+L+ SW + +P + PS+     Y + L     A VKE+  S+
Sbjct: 368 RGFVLKESWKVGFPQDAPSYKKRDKYKEQLSDKIYAQVKEHFYSL 412


>09_04_0162 +
           15245354-15245458,15245558-15245629,15245793-15246617,
           15247787-15248474,15248805-15248821
          Length = 568

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 179 FQFHY*NCSRY*IMSDEAE---QQAEEIEVLKSIYEGDDNFKQVDAKTY 316
           F  H+   ++  ++SD A    QQ EEIE  KS    D NF + D   +
Sbjct: 166 FDQHFEQATKEDLLSDHAIVTFQQVEEIEQDKSAENPDQNFSEEDINIF 214


>01_06_1059 -
           34156139-34156238,34157113-34157189,34158146-34158259,
           34158390-34158569,34159312-34159524
          Length = 227

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 389 KPSFNLEIFYNQHLLATVKENIL----SILNTEAEQWLGCAMTYTLFE 520
           +P  +LEIF    LL  +KE++L     +LN E ++ L     YTL E
Sbjct: 122 EPKIHLEIFQEAELLINIKEHVLVPEHQVLNNEEKKTL--LERYTLKE 167


>01_06_0900 -
           32841880-32842078,32842179-32842300,32842621-32842841,
           32843086-32843224,32843350-32843576,32843677-32843788,
           32843863-32844063,32845349-32845525
          Length = 465

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 311 TYQYKYMDGDKSFILEISWGLKYPTEKP-SFNLEIFYNQHLLATVKENILS 460
           +Y Y YM+G+   ++   W +KY  +   + ++  +   H ++ V  NI++
Sbjct: 321 SYNYHYMEGESMRVMYEPWFVKYKVDLVFAGHVHAYERTHRISNVAYNIVN 371


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,182,687
Number of Sequences: 37544
Number of extensions: 302891
Number of successful extensions: 705
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)