Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19a20f
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82053-3|CAB04837.2| 240|Caenorhabditis elegans Hypothetical pr... 38 0.005
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ... 34 0.086
AF016676-8|AAG24105.1| 502|Caenorhabditis elegans Hypothetical ... 32 0.46
U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f... 30 1.4
AF104858-1|AAC79090.1| 390|Caenorhabditis elegans putative RNA-... 30 1.9
AF063007-5|AAD47125.1| 712|Caenorhabditis elegans Prion-like-(q... 30 1.9
Z78198-5|CAB01571.1| 437|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF125956-9|AAK68289.1| 318|Caenorhabditis elegans Hypothetical ... 28 5.7
AF125956-8|AAD14728.2| 678|Caenorhabditis elegans Hypothetical ... 28 5.7
AF125956-7|AAX55694.1| 657|Caenorhabditis elegans Hypothetical ... 28 5.7
Z68748-11|CAL63997.1| 193|Caenorhabditis elegans Hypothetical p... 28 7.5
U40941-1|AAA81707.3| 306|Caenorhabditis elegans Syntaxin protei... 28 7.5
>Z82053-3|CAB04837.2| 240|Caenorhabditis elegans Hypothetical
protein T26E3.4 protein.
Length = 240
Score = 38.3 bits (85), Expect = 0.005
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Frame = +2
Query: 233 EQQAEEIEVLKSIYEGDD---------NFK-QVDAKTYQYK-YMDGDKSFILEISWGLKY 379
EQQ +EIE L++IY ++ N + + K+ QY+ D D L I + Y
Sbjct: 5 EQQEQEIEALEAIYSEEEIHVASRDYPNIELSIQLKSNQYEDPTDDDFDVELGIEFTENY 64
Query: 380 PTEKPSFNLEIFYNQHLLATVKENILSILNTEAEQWLGCAMTYTLFECLRERVSEIL 550
P E P L + + E+I L + AE+ LG M + + L++ + E++
Sbjct: 65 PDEIPIITLNGIEDAFTAERIAESI-DKLRSVAEENLGMVMVFAIVSALQDEIGELV 120
>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
protein Y81G3A.3 protein.
Length = 1696
Score = 34.3 bits (75), Expect = 0.086
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +2
Query: 344 SFILEISWGLKYPTEKPSFNLEIFYNQHLLATVKENILSILNTEAEQWLGCAMTYTLFEC 523
S IL + YP KP+ +++ Q L +N+L+IL A+ W GC + L
Sbjct: 73 SVILHVKCSEDYPQRKPA--VDLLDPQGLSKEDVQNLLTILRQMADTWEGCVVIAELAHR 130
Query: 524 LRERVSE 544
+RE +++
Sbjct: 131 VREFLTD 137
>AF016676-8|AAG24105.1| 502|Caenorhabditis elegans Hypothetical
protein F41B5.9 protein.
Length = 502
Score = 31.9 bits (69), Expect = 0.46
Identities = 32/130 (24%), Positives = 67/130 (51%), Gaps = 17/130 (13%)
Frame = +2
Query: 248 EIEVLKSIYEGDDNFKQVDAKTYQYK----------YMDGDKSFI------LEISWGLKY 379
++EV+KSI++ F+++ A+T +++ +M GD++ + +++SW Y
Sbjct: 245 QLEVIKSIWQTYGRFEKL-ARTAEFRRKKLFKNNNVFMVGDEACLDTENVEVDVSWFSDY 303
Query: 380 PTEKPSFNLEIFYNQHLLATVKE-NILSILNTEAEQWLGCAMTYTLFECLRERVSEILAG 556
E+ S+ ++ F+N+ L VKE L+ TE L + + L+ V+ +
Sbjct: 304 TYEQVSYFMDCFHNEIFLQIVKEFEALNPTTTELNFMLLQVCLHHAGKKLQGDVA-TMTD 362
Query: 557 QVEEVVSTRV 586
+EEV+S ++
Sbjct: 363 YLEEVISNQL 372
>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta
family protein 4,isoform a protein.
Length = 1080
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +2
Query: 233 EQQAEEIEVLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEI 361
++QAE ++L S+ E D++ +VDA QY ++ K F L+I
Sbjct: 40 KEQAEANQILMSLKEERDSWTKVDA-ILQYSQLNESKYFALQI 81
>AF104858-1|AAC79090.1| 390|Caenorhabditis elegans putative
RNA-binding protein PRP-1 protein.
Length = 390
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +1
Query: 520 VPQGKGVRDTGWPGRGGRVHQGRKNRDR*SDGNY*KTRKEGAAHEST----EAPSVGQG 684
V +G+G TG+ RGGR R+ + + KEGAA ST E P VG+G
Sbjct: 101 VARGRG-GGTGFVDRGGRGRSNGAPRESRDNNRDNRDNKEGAAPRSTRGGFEKPYVGRG 158
>AF063007-5|AAD47125.1| 712|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 59
protein.
Length = 712
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +1
Query: 520 VPQGKGVRDTGWPGRGGRVHQGRKNRDR*SDGNY*KTRKEGAAHEST----EAPSVGQG 684
V +G+G TG+ RGGR R+ + + KEGAA ST E P VG+G
Sbjct: 101 VARGRG-GGTGFVDRGGRGRSNGAPRESRDNNRDNRDNKEGAAPRSTRGGFEKPYVGRG 158
>Z78198-5|CAB01571.1| 437|Caenorhabditis elegans Hypothetical
protein F55C5.6 protein.
Length = 437
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/70 (25%), Positives = 37/70 (52%)
Frame = +2
Query: 230 AEQQAEEIEVLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPSFNLE 409
A Q+ EE+ ++ +I+EG D ++ + Y + Y +G + +G +Y + + E
Sbjct: 36 AAQRFEELGIVYTIFEGSD---RIGGRVYSFPYQNG------YLQFGAEYINGEDNDIYE 86
Query: 410 IFYNQHLLAT 439
I ++LL+T
Sbjct: 87 IVERKNLLST 96
>AF125956-9|AAK68289.1| 318|Caenorhabditis elegans Hypothetical
protein DC2.7b protein.
Length = 318
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 257 VLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPSFNLEIFYNQHLLA 436
+LK +G D FK+++ + QY + + F ++ GLK+ E + +I LL
Sbjct: 100 LLKEYADGGDLFKKLETEGEQYS--ENAQCFFKQLISGLKFIHEHEIVHRDIKLENLLLM 157
Query: 437 TVKENIL 457
K N++
Sbjct: 158 KSKSNLV 164
>AF125956-8|AAD14728.2| 678|Caenorhabditis elegans Hypothetical
protein DC2.7a protein.
Length = 678
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 257 VLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPSFNLEIFYNQHLLA 436
+LK +G D FK+++ + QY + + F ++ GLK+ E + +I LL
Sbjct: 100 LLKEYADGGDLFKKLETEGEQYS--ENAQCFFKQLISGLKFIHEHEIVHRDIKLENLLLM 157
Query: 437 TVKENIL 457
K N++
Sbjct: 158 KSKSNLV 164
>AF125956-7|AAX55694.1| 657|Caenorhabditis elegans Hypothetical
protein DC2.7c protein.
Length = 657
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +2
Query: 257 VLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPSFNLEIFYNQHLLA 436
+LK +G D FK+++ + QY + + F ++ GLK+ E + +I LL
Sbjct: 100 LLKEYADGGDLFKKLETEGEQYS--ENAQCFFKQLISGLKFIHEHEIVHRDIKLENLLLM 157
Query: 437 TVKENIL 457
K N++
Sbjct: 158 KSKSNLV 164
>Z68748-11|CAL63997.1| 193|Caenorhabditis elegans Hypothetical
protein F13H10.9 protein.
Length = 193
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +2
Query: 224 DEAEQQAEEIEVLKSIYEGDDNFKQVDAKTYQYKYMDGDKSFILEISWGLKYPTEKPSFN 403
DE + + ++ + I +D+ ++ D+KT + +DG + I + L P S N
Sbjct: 131 DEEAAKNKRLDTISEIAMSNDSLQRNDSKTNVFNNIDGSRKTISPMEVDLN-PGLSSSIN 189
Query: 404 LE 409
LE
Sbjct: 190 LE 191
>U40941-1|AAA81707.3| 306|Caenorhabditis elegans Syntaxin protein 1
protein.
Length = 306
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 460 NIEHRSGTMARLRHDVHAV*VPQGKGV 540
N+E + G +A++ HD+H + V QG+ V
Sbjct: 216 NLERQMGELAQMFHDLHIMVVSQGEMV 242
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,021,209
Number of Sequences: 27780
Number of extensions: 271477
Number of successful extensions: 653
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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