Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19a19r
(835 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.038
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 30 0.35
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 30 0.35
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.4
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 28 1.9
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 26 7.6
SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces p... 26 7.6
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 26 7.6
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 26 7.6
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 26 7.6
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 33.5 bits (73), Expect = 0.038
Identities = 45/177 (25%), Positives = 69/177 (38%), Gaps = 18/177 (10%)
Frame = -2
Query: 672 PR*TLSSDPPSLPFKT*MSSLLTGTDLL--------IQTTILPPLASRMSVAP--SATFW 523
P T S+D S P T +S T T + + T+ P S S P ++T
Sbjct: 265 PTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSS 324
Query: 522 FG-SSTMLEAIGTKCIXXXXXXXXXXXVMPDAKPVVAPHALQVWT--PPDHSGEETLTHS 352
G SS+ L + T C P P V P + + PP S T T S
Sbjct: 325 TGTSSSPLPSTSTSCTTSTSIPPTGNSTTP-VTPTVPPTSTSSTSTPPPPASTSSTGTSS 383
Query: 351 TAMLVITSNASTRTGVLLVFS-----TPAVMPTSTRMAAGTPNPDAGSTPAHTVAPL 196
+ +L +++ +T T + + TP V PTS+ T N ++ +T P+
Sbjct: 384 SPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPV 440
Score = 31.5 bits (68), Expect = 0.15
Identities = 43/178 (24%), Positives = 66/178 (37%), Gaps = 19/178 (10%)
Frame = -2
Query: 672 PR*TLSSDPPSLPFKT*MSSLLTGTDL------LIQTTILPPL------ASRMSVAPSAT 529
P T S+D S P T +S T T + + T I P + ++ + + P++T
Sbjct: 209 PTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTST 268
Query: 528 FWFGS-STMLEAIGTKCIXXXXXXXXXXXVMPDAKPVVAPHALQVWTPPDHSGEETLTHS 352
+ S+ L T C P V TPP + + S
Sbjct: 269 SSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTS 328
Query: 351 TAMLVITSNASTR------TGVLLVFSTPAVMPTSTRMAAGTPNPDAGSTPAHTVAPL 196
++ L TS + T TG TP V PTST + P P + S+ + +PL
Sbjct: 329 SSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPL 386
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 30.3 bits (65), Expect = 0.35
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Frame = -2
Query: 360 THSTAMLVITSNASTRTGVLLVFSTPAVMPTSTRMAAGTPNPDAGSTPAHTVAPLN*WHP 181
T ST + S+ S +T L+ S+P + + T + TP H++ P N
Sbjct: 539 TPSTTIPTSNSSVSLQTSSSLIISSPIISSSLTATSTSTP------ALTHSITPSN---- 588
Query: 180 VFVLTTWLEDAVVTSGKPSFPTAMVELCIWATETLGSADPASTV*ELATPGLS--KSNE 10
T +++ S + ++++ +C T + S AS + L + +S KS+E
Sbjct: 589 -----TSYTSSLIPSSSTDYSSSLITVCSNVTSEISSTSLASLISTLTSQQISSNKSSE 642
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 30.3 bits (65), Expect = 0.35
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -1
Query: 748 P*GIHTTAPTEVPLSSSTDGTTMATPQMNPLIRSAFLAVQDVN 620
P + TT PT VP SSST + TPQ P L + V+
Sbjct: 401 PSSLSTTDPTLVPQSSSTPKSAQKTPQKLPAFLPNRLTAETVD 443
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.1
Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Frame = +3
Query: 369 PPHCGPA-GSKPV----TRA-GRPPAWRPALPTT*APKLKPI----RCTW--FQLPPALL 512
PP P+ G +P +RA PPA PA+P AP L P+ R + PP+L
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424
Query: 513 MSQTKKLPRARPTS---GTPAAAVL 578
S LP + P S G PAA L
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPL 449
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.4
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Frame = -2
Query: 426 PVVAPHALQVWTPPDHSGEETLTHSTAMLVITSNASTRTGVLLVFSTPAVMPTSTRMAAG 247
PV AP A Q+ G++ S+ + ++++ ST V+ P PT A
Sbjct: 1270 PVAAPTAQQI-----QPGKQASAVSSNVPAVSASISTPPAVVPTVQHP--QPTKQIPTAA 1322
Query: 246 TPNPDAGSTPAHTV-----APLN*WHPVFVLTTWLEDAVVTSGKPSFP 118
+P ST +T APL L + AV TS KP P
Sbjct: 1323 VKDPSTTSTSFNTAPIPQQAPLENQFSKMSLEPPVRPAVPTSPKPQIP 1370
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 112 NGGTLHMGNGNFGK 71
NGG +H G GNFGK
Sbjct: 706 NGGLIHQGVGNFGK 719
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 728 RANRGTVVIVHGWNNNGNTPDEPSHQI 648
R +G+V+I +GWN +GN ++ +
Sbjct: 295 RTKKGSVLI-YGWNEHGNASNDDKRDV 320
>SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 191
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 333 TSNASTRTGVLLVFST-PAVMPTSTRMAA 250
+S+ASTR GV FST P+V P + AA
Sbjct: 55 SSSASTRKGVWNFFSTHPSVHPANDEHAA 83
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 50 TVEAGSALPKVSVAHMQSSTIAVGKLGFPDVTTASSNQVVST 175
T E G+ LPK HM++ T +V K+ D T + + V+T
Sbjct: 611 TSEKGNILPKTVETHMKALTTSVDKV--LDQTAEALEEFVNT 650
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 381 HSGEETLTHSTAMLVITSNASTRTGVLLVFSTPA 280
HSG+ T ++A+L + N + + V+L + TPA
Sbjct: 214 HSGKGWETFTSAVLQVALNRNRKGLVILAWGTPA 247
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 7.6
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 197 SGA-TV*AGVDPASGLGVPAAIRVEVGITAGVENTKSTPVRVDAFDVMTSIAV 352
SGA T+ AG P GLG EVGI+A N K +A + S AV
Sbjct: 428 SGARTLPAGCGPCIGLGTGLLKDGEVGISATNRNFKGRMGSREALAYLASPAV 480
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,806,913
Number of Sequences: 5004
Number of extensions: 85820
Number of successful extensions: 283
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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