Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19a19f
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.55 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.72 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.96 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   1.7  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   2.2  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    27   2.9  
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||...    26   5.1  
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|...    26   5.1  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    26   5.1  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    26   6.7  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   6.7  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = +3

Query: 279 TATSTP*GIHTTAPTEVPLSSSTDGTTMATPR*TLS---SDPPSLPFKT*MSSLLTGTDL 449
           T TSTP    T APT    +SS   TT   P  + S   S+    P  T  SS    T  
Sbjct: 603 TPTSTPLSNSTVAPTST-FTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSG 661

Query: 450 LIQTTILPPLASRMSVAPSATF 515
           L  ++   P +S  S+ P++TF
Sbjct: 662 LPTSSASTP-SSNSSIVPTSTF 682


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = +3

Query: 207 PEAAPIISTGFSPDRTKTIARCL*TATSTP*GIHTTAPT--EVPLSSSTDGTTMATPR*T 380
           P  A   STG S     + +    T+TS P   ++T P    VP +S++  +T   P  T
Sbjct: 317 PPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPAST 376

Query: 381 LSSDPPSLPFKT*MSSLLTGTDL 449
            S+   S P  +  +S  T T +
Sbjct: 377 SSTGTSSSPLLSTSTSCTTSTSI 399



 Score = 26.6 bits (56), Expect = 3.9
 Identities = 27/116 (23%), Positives = 47/116 (40%)
 Frame = +3

Query: 207 PEAAPIISTGFSPDRTKTIARCL*TATSTP*GIHTTAPTEVPLSSSTDGTTMATPR*TLS 386
           P  A   STG S     + +    T+TS P   ++T P    +  ++  T + T   T S
Sbjct: 371 PPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTS 430

Query: 387 SDPPSLPFKT*MSSLLTGTDLLIQTTILPPLASRMSVAPSATFWFGSSTMLEAIGT 554
           +  P     T ++S    T     +T +P  ++ ++  P  T    +ST +    T
Sbjct: 431 TSVPYT--STPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTST 484



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = +3

Query: 303 IHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSL-LTGTDLLIQT-TILPP 476
           + T +P E+  +S T  T+ +TP  T S+   S    T  SS  L  T     T T +PP
Sbjct: 64  LSTGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPP 123

Query: 477 LASRMSVAPSAT 512
                S++   T
Sbjct: 124 TGGSSSLSTPIT 135


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
 Frame = -2

Query: 672 PPHCGPA-GSKPV----TRA-GRPPAWRPALPTT*APKLKPI----RCTW--FQLPPALL 529
           PP   P+ G +P     +RA   PPA  PA+P   AP L P+    R +      PP+L 
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLP 424

Query: 528 MSQTKKLPRARPTS---GTPAAAVL 463
            S    LP + P S   G PAA  L
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPL 449


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 44/197 (22%), Positives = 74/197 (37%), Gaps = 6/197 (3%)
 Frame = +3

Query: 186  STMNYWAPEAAPIISTGFSPDRTKTIARCL*TATSTP*GIHTTAPTEVPLSSST--DGTT 359
            S +N   P  +  +    +P  + T+       TSTP    T   T  P++SST  + +T
Sbjct: 2176 SVLNSSTPITSSTVVNSSTPITSSTVVN-----TSTPITSSTVVNTSTPITSSTVVNSST 2230

Query: 360  MATPR*TLSSDPPSLPFKT*MSSLLTGTDLLIQTTILPPLASRMSVAPSATFWFGSSTML 539
              T    L+S  P        SS    +  ++ T+   P+ S   V  S      SST++
Sbjct: 2231 PITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTS--TPITSSTVVNSSTP--ITSSTVV 2286

Query: 540  EA---IGTKCIXXXXXXXXXXXXMPDAKPVVAPHALQVWTPPDHSG-EETLTHSTAMLVI 707
                 I +  +            +  + P+ +   L   TP   S    T T  T+  V+
Sbjct: 2287 NTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVL 2346

Query: 708  TSNASTRTGVLLVFSTP 758
             S+    +  ++  STP
Sbjct: 2347 NSSTPITSSTVVNTSTP 2363



 Score = 25.4 bits (53), Expect = 8.9
 Identities = 42/197 (21%), Positives = 74/197 (37%), Gaps = 6/197 (3%)
 Frame = +3

Query: 186  STMNYWAPEAAPIISTGFSPDRTKTIARCL*TATSTP*GIHTTAPTEVPLSSST--DGTT 359
            S +N   P  +  +    +P  + T+       TSTP    T   T  P++SST  + +T
Sbjct: 1336 SVLNSSTPITSSTVVNSSTPITSSTVVN-----TSTPITSSTVVNTSTPITSSTVVNSST 1390

Query: 360  MATPR*TLSSDPPSLPFKT*MSSLLTGTDLLIQTTILPPLASRMSVAPSATFWFGSSTML 539
              T    L+S  P        SS    +  ++ T+   P+ S   V  S      SST++
Sbjct: 1391 PITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTS--TPITSSTVVNSSTP--ITSSTVV 1446

Query: 540  EA---IGTKCIXXXXXXXXXXXXMPDAKPVVAPHALQVWTPPDHSG-EETLTHSTAMLVI 707
                 I +  +            +  + P+ +   +   TP   S    T T  T+  V+
Sbjct: 1447 NTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVVNTSTPITSSTVV 1506

Query: 708  TSNASTRTGVLLVFSTP 758
             ++    +  ++  STP
Sbjct: 1507 NTSTPITSSTVVNSSTP 1523


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 294 P*GIHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGT 443
           P  + TT PT VP SSST  +   TP+   +  P  L  +T  ++ LT +
Sbjct: 401 PSSLSTTDPTLVPQSSSTPKSAQKTPQKLPAFLPNRLTAETVDTNKLTAS 450


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 6/108 (5%)
 Frame = +3

Query: 204 APEAAPIISTGFSPDRTKTIARCL*TATSTP*GIHTTAPTEVPLSSSTDGTTMATPR*TL 383
           A    P++ T   P    T    + T T TP    TT    V    +    TM TP    
Sbjct: 89  AAMTTPMVETTTIPTVETTTTPMVETTTITPMVETTTITPMVEAMITLMEETMTTPMEET 148

Query: 384 SSDPPSLPFKT*MSSLLTGTDLLIQTTI------LPPLASRMSVAPSA 509
           ++  P     T M    T T ++  TTI        P+   M++ P A
Sbjct: 149 TTILPMAAMTTPMEETTTTTPMVETTTIPTVETMTTPMVEAMTILPMA 196


>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 304 IPHGVDVAVHKHLAIVLVLSGEKPVLIIGAASGAQ*FIVDGFMQV 170
           I HG D      + + L +S  KP++++GA   +     DG M +
Sbjct: 122 ITHGTDSLEETAMFLDLTISTAKPIVVVGAMRPSTAIGADGPMNL 166


>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 304 IPHGVDVAVHKHLAIVLVLSGEKPVLIIGAASGAQ*FIVDGFMQV 170
           I HG D      + + L +S  KP++++GA   +     DG M +
Sbjct: 122 ITHGTDSLEETAMFLDLTISTAKPIVVVGAMRPSTAIGADGPMNL 166


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +3

Query: 291 TP*GIHTTAPTEVPLSSSTDGTTMATPR*TLSSDPPSLPFKT*MSSLLTGTDLLIQ 458
           TP   +++ P E P S S    TM  P         S+PF T  + L  G  ++ Q
Sbjct: 401 TPSFFNSSQPIETPSSYSHLSDTMLVPANMAGIPSVSIPFGTLNNGLPMGIQIMAQ 456


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 660 HSGEETLTHSTAMLVITSNASTRTGVLLVFSTPA 761
           HSG+   T ++A+L +  N + +  V+L + TPA
Sbjct: 214 HSGKGWETFTSAVLQVALNRNRKGLVILAWGTPA 247


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
 Frame = +3

Query: 213 AAPIISTGFSPDRTKTIARCL*TATST-----P*GIHTTAPTEVPLSSSTDGTTMATPR* 377
           +A + +T FS   T+T    + +   T     P   H +  T VP ++S + TT   P  
Sbjct: 41  SANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTT 100

Query: 378 TLSSDPPSLPFKT*MSSLLTGTDLLIQTTILPPL--ASRMSVAPSAT 512
           +L++   + P  T ++S          TT++PP    +  +V P  T
Sbjct: 101 SLNTTTTTAPPTTHVNST---------TTVVPPTTHVNTTTVVPPTT 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,410,440
Number of Sequences: 5004
Number of extensions: 75077
Number of successful extensions: 237
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)