Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19a18r
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    57   2e-09
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    27   2.9  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    27   3.9  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    26   6.7  
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ...    26   6.7  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    25   8.9  

>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
 Frame = -2

Query: 715 NRQQLMEVSE-ELPEYLLGLFEPSHLQYHMEANHTMEPTLAELTEVAIKSL--SRNKE-- 551
           NR    E+S  +LP  LLGLF   HL Y ++    ++P L+E+ E A+  L  + N++  
Sbjct: 241 NRTDFDELSNAQLP--LLGLFSDYHLSYDIDYQPEVQPKLSEMVETALDVLLNATNEDTS 298

Query: 550 -GFFLFVEGGRIDXXXXXXXXXXXLDETIELSAAVEKARELLSEQDSLIVVTADH 389
            GFFL +EG RID           + E +E + A E A   + +    ++ T+DH
Sbjct: 299 KGFFLLIEGSRIDMASHNNDPIAHVYEVMEYNRAFEIASAFVEKNGGSLISTSDH 353


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 121 ALFSGLYEQSHIPHRMAYAACIGPGKHACQHSPHS 17
           A F G+++    PH +   +C   G +A  H PHS
Sbjct: 222 AKFFGIFDWD--PHGLCIYSCFKYGSNAYSHEPHS 254


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 328 DALGDDGIPYMTLSYGNGPGYREPRGGQRVDP 233
           DA G++G+       G GPG   P GG   DP
Sbjct: 69  DAYGEEGLNGQPGGPGGGPGEGFPGGGFGFDP 100


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = -2

Query: 247 QRVDPTRQDYRGSEYVYPAAVPLDSETHGGDDVAVFAWGPHHALFSGLYEQSHIPHRM 74
           Q++ PT  D+   + + P+ +P   E   G D ++F+     A+F  +   +  P R+
Sbjct: 360 QKILPTLLDHLNDQKLVPSLLPCIFEISKGLDSSIFSSKVFTAIFPIISAANSYPERV 417


>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 323

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -2

Query: 448 EKARELLSEQDSLIVVTA-DHAHVMSISGYTQRG-GDILGPSDAL 320
           EK  + +SE++ L ++   DH HV++  G   +   + +GP DAL
Sbjct: 134 EKMAKEISEREGLTIIPPYDHPHVLAGQGTAAKELFEEVGPLDAL 178


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 295 TLSYGNGPGYREPRGGQRVDPT 230
           T+SY +GP + +  G +R DP+
Sbjct: 294 TISYRSGPEWEQRFGNRRADPS 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,461
Number of Sequences: 5004
Number of extensions: 60420
Number of successful extensions: 206
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)