Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19a18r
(761 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 35 0.073
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 34 0.096
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical pr... 33 0.29
X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein. 33 0.29
AF077540-8|AAC26310.2| 683|Caenorhabditis elegans Btb and math ... 32 0.51
Z46787-15|CAO78702.1| 829|Caenorhabditis elegans Hypothetical p... 31 0.68
Z35596-1|CAO78712.1| 829|Caenorhabditis elegans Hypothetical pr... 31 0.68
AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical ... 30 1.6
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ... 30 1.6
AF016427-8|AAB65355.1| 513|Caenorhabditis elegans Hypothetical ... 30 2.1
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 30 2.1
Z78201-2|CAB01588.1| 324|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 29 3.6
AF465981-1|AAL76993.1| 324|Caenorhabditis elegans cuticle colla... 29 3.6
AF262406-1|AAL08218.1| 324|Caenorhabditis elegans cuticle colla... 29 3.6
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 29 4.8
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 29 4.8
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 29 4.8
Z82053-2|CAB04835.1| 365|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z34533-5|CAA84298.1| 781|Caenorhabditis elegans Hypothetical pr... 28 6.3
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 28 6.3
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 28 6.3
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 6.3
Z81131-1|CAB03423.4| 464|Caenorhabditis elegans Hypothetical pr... 28 8.3
U40937-1|AAA81693.1| 396|Caenorhabditis elegans Collagen protei... 28 8.3
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 34.7 bits (76), Expect = 0.073
Identities = 25/102 (24%), Positives = 46/102 (45%)
Frame = -3
Query: 333 PRTRWATTASPT*RSRMATVPGTASRGAGSASTRHDKITEGQSTCTRPQCRWTRRLTAET 154
P T TT +PT + T+P T S +++T T ++ T P + T T
Sbjct: 255 PETTKPTTTTPT-TTTTTTIPSTTSSTTSTSTTTSVVTTTTVTSTTEPTTSTSTPTTTTT 313
Query: 153 TWRYSPGGLTTPSSLASTSRVTSRIAWRTQHASVPASTLANI 28
+P +TP++ ++T+ T+ + T + P +T +I
Sbjct: 314 MQTTTPSTTSTPTTTSTTT--TTSASTTTISTTKPPTTQIDI 353
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 34.3 bits (75), Expect = 0.096
Identities = 32/100 (32%), Positives = 41/100 (41%)
Frame = -3
Query: 327 TRWATTASPT*RSRMATVPGTASRGAGSASTRHDKITEGQSTCTRPQCRWTRRLTAETTW 148
T +T +P T P T S S ST TEG S+ P T + T +T
Sbjct: 926 TSQGSTQTPGSTGSTVTQPSTVSDSTSSGSTVTVGSTEGSSSPI-PS---TSQNTNPSTS 981
Query: 147 RYSPGGLTTPSSLASTSRVTSRIAWRTQHASVPASTLANI 28
S TP S STS V S + T + P +TL +I
Sbjct: 982 SGSSMSTQTPQSSQSTSPVESSTSGATSSSGSPGTTLTSI 1021
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 33.9 bits (74), Expect = 0.13
Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 4/122 (3%)
Frame = -3
Query: 393 TTLTSCPXXXXXXXXXXXXAPRTRWATTASPT*RSRMATVPGTASRGAGS----ASTRHD 226
TT T+ P P T TT +PT + T P T + + A+T +
Sbjct: 197 TTTTTTPTTTTTTPTTTTTVPTT---TTTTPTTTTTTTTTPTTTTTTPTTTTTPATTTSE 253
Query: 225 KITEGQSTCTRPQCRWTRRLTAETTWRYSPGGLTTPSSLASTSRVTSRIAWRTQHASVPA 46
T +T T+ + T T TT + TT ++ A T++ T+ T+ S P
Sbjct: 254 TTTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTPTTTTTTAKTTKSTTTTTKTTKTTSTPT 313
Query: 45 ST 40
+T
Sbjct: 314 TT 315
Score = 33.1 bits (72), Expect = 0.22
Identities = 25/96 (26%), Positives = 38/96 (39%)
Frame = -3
Query: 327 TRWATTASPT*RSRMATVPGTASRGAGSASTRHDKITEGQSTCTRPQCRWTRRLTAETTW 148
T TT +PT + T P T + + +T TE +T T + T T TT
Sbjct: 70 TSTTTTTTPTTPTTTTTTPTTTTTTPTTTTTTPTTTTETTTTPT-TETTTTPTTTTPTTT 128
Query: 147 RYSPGGLTTPSSLASTSRVTSRIAWRTQHASVPAST 40
+P TT ++ T+ T T + P +T
Sbjct: 129 TTTPTTTTTETTTTPTTTTTETTTTPTTTTTTPTTT 164
Score = 31.1 bits (67), Expect = 0.89
Identities = 29/124 (23%), Positives = 43/124 (34%), Gaps = 4/124 (3%)
Frame = -3
Query: 393 TTLTSCPXXXXXXXXXXXXAPRTRWATTASPT*RSRMATVPGTASRGAGSASTRHDKITE 214
TT T+ P T TT +PT + T P T + + +T T
Sbjct: 72 TTTTTTPTTPTTTTTTPTTTTTTPTTTTTTPTTTTETTTTPTTETTTTPTTTTPTTTTTT 131
Query: 213 GQSTCTR----PQCRWTRRLTAETTWRYSPGGLTTPSSLASTSRVTSRIAWRTQHASVPA 46
+T T P T T TT +P TT + +T+ T+ T +
Sbjct: 132 PTTTTTETTTTPTTTTTETTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTT 191
Query: 45 STLA 34
+T A
Sbjct: 192 TTTA 195
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 33.9 bits (74), Expect = 0.13
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 11/137 (8%)
Frame = -3
Query: 399 RRTTLTSCPXXXXXXXXXXXXAPRTRWATTASPT*RSRMATVPGTASRGAGSASTRHDKI 220
RR+T+ S R R TT P+ ++ VP T + + + T K
Sbjct: 456 RRSTIMSATSKVAIIVGKDSSFARARLFTTKHPS--TQKIDVPTTTVQTSTTVPTTPSKT 513
Query: 219 TEGQSTCTRPQCRWTRRLTAETTW--RYSPGGLTT----PSSLASTSRVTSRIA-----W 73
T +T +P T ++ TT P +T+ PS+ AST+ T+
Sbjct: 514 TATTTTTPKPTTTETATTSSSTTTVTTQKPTTVTSTTTLPSTTASTTTKTTTSTPTSPQT 573
Query: 72 RTQHASVPASTLANIHH 22
T H PAS++A++ H
Sbjct: 574 TTTHVGAPASSVASVAH 590
>Z72504-4|CAH60755.1| 653|Caenorhabditis elegans Hypothetical
protein C29E6.1b protein.
Length = 653
Score = 32.7 bits (71), Expect = 0.29
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = -3
Query: 279 TVPGTASRG-AGSASTRHDKITEGQSTCTRPQCRWTRRLTAETTWRYSPGGLTTPSSLAS 103
TVP T S+ A + +T TE +T + T++ T T+ P + ++ +
Sbjct: 346 TVPTTPSKTTATTTTTPKPTTTETATTSSSTTTVTTQKPTTVTSTTTLPSTTASTTTKTT 405
Query: 102 TSRVTSRIAWRTQHASVPASTLANIHH 22
TS TS T H PAS++A++ H
Sbjct: 406 TSTPTSPQT-TTTHVGAPASSVASVAH 431
>X91045-1|CAA62505.1| 693|Caenorhabditis elegans let-653 protein.
Length = 693
Score = 32.7 bits (71), Expect = 0.29
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = -3
Query: 279 TVPGTASRG-AGSASTRHDKITEGQSTCTRPQCRWTRRLTAETTWRYSPGGLTTPSSLAS 103
TVP T S+ A + +T TE +T + T++ T T+ P + ++ +
Sbjct: 386 TVPTTPSKTTATTTTTPKPTTTETATTSSSTTTVTTQKPTTVTSTTTLPSTTASTTTKTT 445
Query: 102 TSRVTSRIAWRTQHASVPASTLANIHH 22
TS TS T H PAS++A++ H
Sbjct: 446 TSTPTSPQT-TTTHVGAPASSVASVAH 471
>AF077540-8|AAC26310.2| 683|Caenorhabditis elegans Btb and math
domain containingprotein 47 protein.
Length = 683
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 303 GMPSSPSASEGPRMSPPRCVYPLM 374
G PSSPSA E P PP +YP +
Sbjct: 369 GAPSSPSAPEAPSEPPPPKIYPTL 392
>Z46787-15|CAO78702.1| 829|Caenorhabditis elegans Hypothetical
protein C30D11.1a protein.
Length = 829
Score = 31.5 bits (68), Expect = 0.68
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -1
Query: 506 PRELGPPRSRRDHRTKRGGGESTGAALGAGFINRSD--GGPRSRHVHQR 366
P L PP T RGG TG G+G + + GGPR+ H +R
Sbjct: 28 PATLVPPTHHHSRSTNRGGVSGTGGG-GSGGLQGAPGAGGPRASHSSRR 75
>Z35596-1|CAO78712.1| 829|Caenorhabditis elegans Hypothetical
protein C30D11.1a protein.
Length = 829
Score = 31.5 bits (68), Expect = 0.68
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -1
Query: 506 PRELGPPRSRRDHRTKRGGGESTGAALGAGFINRSD--GGPRSRHVHQR 366
P L PP T RGG TG G+G + + GGPR+ H +R
Sbjct: 28 PATLVPPTHHHSRSTNRGGVSGTGGG-GSGGLQGAPGAGGPRASHSSRR 75
>AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical
protein Y46G5A.1b protein.
Length = 1021
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/56 (32%), Positives = 23/56 (41%)
Frame = -1
Query: 461 KRGGGESTGAALGAGFINRSDGGPRSRHVHQRVHTARRGHPRPLGRAGRRRHPLHD 294
K G G G G GGP +++RVHT RR H + + R P D
Sbjct: 59 KASGSSERGGITGGG----GGGGPTDDILYERVHTERRHHHQTSSPSQYPRPPSRD 110
>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
protein Y46G5A.1a protein.
Length = 1085
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/56 (32%), Positives = 23/56 (41%)
Frame = -1
Query: 461 KRGGGESTGAALGAGFINRSDGGPRSRHVHQRVHTARRGHPRPLGRAGRRRHPLHD 294
K G G G G GGP +++RVHT RR H + + R P D
Sbjct: 59 KASGSSERGGITGGG----GGGGPTDDILYERVHTERRHHHQTSSPSQYPRPPSRD 110
>AF016427-8|AAB65355.1| 513|Caenorhabditis elegans Hypothetical
protein F32D1.9 protein.
Length = 513
Score = 29.9 bits (64), Expect = 2.1
Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 1/96 (1%)
Frame = -1
Query: 632 YGGKPYHGADPGRA-HGSGDQIVESQQGRILLVCRGRQDRPRAPRELGPPRSRRDHRTKR 456
+G P A R+ GSG S R ++ R R+P R RRD T+R
Sbjct: 362 FGPGPVGAASAPRSLMGSGAFSTVSDDDEERRSSRRKRSRSRSPHR-DRDRDRRDRETRR 420
Query: 455 GGGESTGAALGAGFINRSDGGPRSRHVHQRVHTARR 348
G + +RS G R R R RR
Sbjct: 421 RGERESDRTSSRRHRSRSASGDRRRKRDDREREKRR 456
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/61 (32%), Positives = 24/61 (39%)
Frame = -1
Query: 485 RSRRDHRTKRGGGESTGAALGAGFINRSDGGPRSRHVHQRVHTARRGHPRPLGRAGRRRH 306
R++R + T GGG G A G G GG H + G P P G AG
Sbjct: 93 RAKRQYATAAGGGG--GYAAGGGGGGGGGGGGGGCHCAAQASGCPAGPPGPPGEAGTDGE 150
Query: 305 P 303
P
Sbjct: 151 P 151
>Z78201-2|CAB01588.1| 324|Caenorhabditis elegans Hypothetical
protein ZK836.1 protein.
Length = 324
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -2
Query: 340 LGPSDALGDDGIPYMTLSYGNGPGYREPRGGQRVDPTRQDYRGSE 206
+GP+ A GDDG P + G+ R GQR P Q G E
Sbjct: 208 MGPTGAPGDDGAPGASGMKGDDAEKPVGRQGQRGQPGEQGPDGEE 252
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.1 bits (62), Expect = 3.6
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Frame = -3
Query: 315 TTASPT*RSRMATVPGTASRGAGSASTRHDKITEGQSTCTRPQCRWTRRLTAETTWRYSP 136
TT S T + M T T + S +T T T T P T + +T S
Sbjct: 388 TTTSTTFTTTMLTST-TTEEPSTSTTTTEVTSTSSTVTTTEPTTTLTTSTASTSTTEPST 446
Query: 135 GGLTT-PSSLASTSRVTSRIAWRTQHASVPAST 40
+TT PS+ TS VTS + T + P ST
Sbjct: 447 STVTTSPSTSPVTSTVTSSSSSSTT-VTTPTST 478
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.1 bits (62), Expect = 3.6
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Frame = -3
Query: 315 TTASPT*RSRMATVPGTASRGAGSASTRHDKITEGQSTCTRPQCRWTRRLTAETTWRYSP 136
TT S T + M T T + S +T T T T P T + +T S
Sbjct: 388 TTTSTTFTTTMLTST-TTEEPSTSTTTTEVTSTSSTVTTTEPTTTLTTSTASTSTTEPST 446
Query: 135 GGLTT-PSSLASTSRVTSRIAWRTQHASVPAST 40
+TT PS+ TS VTS + T + P ST
Sbjct: 447 STVTTSPSTSPVTSTVTSSSSSSTT-VTTPTST 478
>AF465981-1|AAL76993.1| 324|Caenorhabditis elegans cuticle collagen
LON-3 protein.
Length = 324
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -2
Query: 340 LGPSDALGDDGIPYMTLSYGNGPGYREPRGGQRVDPTRQDYRGSE 206
+GP+ A GDDG P + G+ R GQR P Q G E
Sbjct: 208 MGPTGAPGDDGAPGASGMKGDDAEKPVGRQGQRGQPGEQGPDGEE 252
>AF262406-1|AAL08218.1| 324|Caenorhabditis elegans cuticle collagen
protein LON-3 protein.
Length = 324
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -2
Query: 340 LGPSDALGDDGIPYMTLSYGNGPGYREPRGGQRVDPTRQDYRGSE 206
+GP+ A GDDG P + G+ R GQR P Q G E
Sbjct: 208 MGPTGAPGDDGAPGASGMKGDDAEKPVGRQGQRGQPGEQGPDGEE 252
>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
protein.
Length = 1492
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 394 PPSLRLMNPAPRAAPVLSPPP 456
PP+L + +P+ AP+ +PPP
Sbjct: 1244 PPALSVFQHSPQGAPITAPPP 1264
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 394 PPSLRLMNPAPRAAPVLSPPP 456
PP+L + +P+ AP+ +PPP
Sbjct: 1264 PPALSVFQHSPQGAPITAPPP 1284
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 28.7 bits (61), Expect = 4.8
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Frame = -3
Query: 318 ATTASPT*RSRMATVPGTASRGAGSAST---RHDKITEGQSTCTRPQCRWTRRLTAETTW 148
+++ SP ++ T P T S S+ST + IT ++T T P T + TT
Sbjct: 711 SSSTSPV-QTTTTTAPETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTT 769
Query: 147 RYSPGGLTTPSSLASTSRVTSRIAWRTQHASVPASTLANIHHIQLLNP 4
PSS + + T+ A T P+S+ + + + P
Sbjct: 770 APETTSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQTTTITAP 817
Score = 28.3 bits (60), Expect = 6.3
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Frame = -3
Query: 279 TVPGTASRGAGSAST---RHDKITEGQSTCTRPQCRWTRRLTAETTWRYSPGGLTTPSSL 109
T P T S S+ST + IT ++T T P T + TT PSS
Sbjct: 286 TAPETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSS 345
Query: 108 ASTSRVTSRIAWRTQHASVPASTLANIHHIQLLNP 4
+ + T+ A T P+S+ + + P
Sbjct: 346 TTPVQTTTTTAPETTRTEPPSSSTTPVQNTTTTAP 380
Score = 27.9 bits (59), Expect = 8.3
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Frame = -3
Query: 279 TVPGTASRGAGSAST---RHDKITEGQSTCTRPQCRWTRRLTAETTWRYSPGGLTTPSSL 109
T P T S A S+ST + T ++T T P T + TT PSS
Sbjct: 102 TAPETTSTEAPSSSTTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTTAPETTSTEAPSSS 161
Query: 108 ASTSRVTSRIAWRTQHASVPASTLANI 28
+ + T+ A T P+S+ + +
Sbjct: 162 TTPVQTTTTTAPETTSTEPPSSSTSPV 188
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Frame = -3
Query: 279 TVPGTASRGAGSAST---RHDKITEGQSTCTRPQCRWTRRLTAETTWRYSPGGLTTPSSL 109
T P T S S+ST + IT ++T T P T + TT PSS
Sbjct: 401 TAPETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSS 460
Query: 108 ASTSRVTSRIAWRTQHASVPASTLANIHHIQLLNP 4
+ + T+ A T P+S+ + + P
Sbjct: 461 TTPVQTTTTTAPETTSTEPPSSSTTPVQTTTITAP 495
Score = 27.9 bits (59), Expect = 8.3
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = -3
Query: 279 TVPGTASRGAGSAST---RHDKITEGQSTCTRPQCRWTRRLTAETTWRYSPGGLTTPSSL 109
T P T S S+ST + IT ++T T P T + TT +PSS
Sbjct: 470 TAPETTSTEPPSSSTTPVQTTTITAPETTSTEPPSSSTTPVQTTTTTAPETTSTESPSSS 529
Query: 108 ASTSRVTSRIAWRTQHASVPAST 40
+ + T+ A T P+S+
Sbjct: 530 TTPVQTTTTTAPETTSTEPPSSS 552
>Z82053-2|CAB04835.1| 365|Caenorhabditis elegans Hypothetical
protein T26E3.2 protein.
Length = 365
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -1
Query: 614 HGADPGRAHGSGDQIVESQQGRILLVCRGRQDRPRAP-RELGPPRSRRDH 468
H + R G+GD +VE+ G +++ PR P +LG R R H
Sbjct: 20 HTPEASRLMGNGDSVVENLNGHTNGAVAKKKNEPRVPDMQLGKCRYVRLH 69
>Z34533-5|CAA84298.1| 781|Caenorhabditis elegans Hypothetical
protein B0285.7 protein.
Length = 781
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +2
Query: 38 SVLAGTDACCVRHAMRDV 91
+++ GT ACCV HA+R++
Sbjct: 739 NIVEGTAACCVEHAIREM 756
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 28.3 bits (60), Expect = 6.3
Identities = 28/98 (28%), Positives = 40/98 (40%)
Frame = -3
Query: 333 PRTRWATTASPT*RSRMATVPGTASRGAGSASTRHDKITEGQSTCTRPQCRWTRRLTAET 154
P T TT S T S +T PG+ SAST T ST + + + T+
Sbjct: 441 PSTTLGTTQSTT--SGPSTTPGSTISTTSSASTTSGPSTSSGSTVSTT----SGQSTSSG 494
Query: 153 TWRYSPGGLTTPSSLASTSRVTSRIAWRTQHASVPAST 40
T + + G TT S ++ S T S P++T
Sbjct: 495 TTKSTTSGPTTSSGPSTVSERTLSTTSGPSTTSGPSTT 532
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -1
Query: 578 DQIVESQQGRILLVCRGRQD-RPRAPRELGPPRSRRDHRTKRGGGESTGAALGAG 417
+QI S + V RQ+ + + PR +GPP R + K GG S G+ G+G
Sbjct: 1019 EQIELSNVEPVSFVTPARQESQTQKPRIVGPPIRRPRPKNKNSGGGSGGSG-GSG 1072
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -1
Query: 578 DQIVESQQGRILLVCRGRQD-RPRAPRELGPPRSRRDHRTKRGGGESTGAALGAG 417
+QI S + V RQ+ + + PR +GPP R + K GG S G+ G+G
Sbjct: 1116 EQIELSNVEPVSFVTPARQESQTQKPRIVGPPIRRPRPKNKNSGGGSGGSG-GSG 1169
>Z81131-1|CAB03423.4| 464|Caenorhabditis elegans Hypothetical
protein T24D1.2 protein.
Length = 464
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 309 ASPT*RSRMATVPGTASRGAGSASTRHDKITEGQSTCTR 193
ASP RSR+ + GT+ G S+S+ + T G ++ R
Sbjct: 59 ASPYSRSRIRSTAGTSDAGPSSSSSVRGRGTRGTTSARR 97
>U40937-1|AAA81693.1| 396|Caenorhabditis elegans Collagen protein
164 protein.
Length = 396
Score = 27.9 bits (59), Expect = 8.3
Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 2/122 (1%)
Frame = -1
Query: 671 PAGTIRTESLTISYGGKPYHGADPGR--AHGSGDQIVESQQGRILLVCRGRQDRPRAPRE 498
PAG + ES + G PG+ A GS +Q SQ G + C P P
Sbjct: 105 PAGP-KGESGSAGEPGTDGTDGTPGKDGADGSNEQTA-SQAGDLCTAC------PAGPPG 156
Query: 497 LGPPRSRRDHRTKRGGGESTGAALGAGFINRSDGGPRSRHVHQRVHTARRGHPRPLGRAG 318
+ + +R R ++G + G A G D GP H GHP P+G AG
Sbjct: 157 VAGYKGKRGPRGEKGDKGAPGNAGRDGA--PGDDGPEGDH----------GHPGPMGPAG 204
Query: 317 RR 312
+
Sbjct: 205 EK 206
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,433,919
Number of Sequences: 27780
Number of extensions: 395197
Number of successful extensions: 1684
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1677
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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