Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19a18f
         (741 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    25   0.64 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.5  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   4.5  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.5  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   6.0  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -1

Query: 267 NMTTFRA---YPLLPSYQARSPSSLWASRDQYSDSS 169
           N+TT +    Y L P+Y+ R    LW   +Q SD +
Sbjct: 395 NLTTRQVRTLYKLPPNYEIRHKFKLWNFNNQISDDN 430


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 188  TSTPTPARGPALRASAGSASTPRHPGGNR 102
            T   +P R  A  AS+  + TPR   G+R
Sbjct: 925  THAGSPCRNSASPASSDRSGTPRSTNGDR 953


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 188 SRDAQSELGERAWYDGSSGYARNVVMFLG 274
           + D    + E  WYD S      V +F+G
Sbjct: 274 TEDLYFAIYEMHWYDASKQIQNEVFIFMG 302


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 437 PSKPSPLPGRLGS 399
           PS P P PG LGS
Sbjct: 209 PSTPYPPPGSLGS 221


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 614 HASPAGAYAHTADRNWESDG 673
           HA P+GAY+      +  DG
Sbjct: 408 HAGPSGAYSPDGTMGYMMDG 427


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,918
Number of Sequences: 336
Number of extensions: 2775
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)