Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19a18f
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 56 5e-09
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.1
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch... 27 3.7
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 3.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.9
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 26 6.5
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 8.6
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 25 8.6
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 56.0 bits (129), Expect = 5e-09
Identities = 42/141 (29%), Positives = 66/141 (46%)
Frame = +2
Query: 233 GSSGYARNVVMFLGDGMSVATLTAARTLLGQRRGQTGEESRLSFEHFPTVGLSKTYCLDA 412
G++ + V+M + DGM +L+ R+ + + G L EH +G S+T +
Sbjct: 54 GTNEKPKFVIMMVSDGMGPGSLSMTRSFVETLNDKEGYRLPLD-EHL--IGSSRTRSSSS 110
Query: 413 QVADSACSASAYLCGAKANLGTIGVSGHVARHHCTAATDAAHQLASIASWALDADRDAGI 592
+ DSA A+A+ C K G +GV + C +AA + + GI
Sbjct: 111 LITDSAAGATAFSCANKTYNGAVGVLDN--EKPCGTILEAAKEAGYLT----------GI 158
Query: 593 VTTTRVTHASPAGAYAHTADR 655
V T+RVT A+PA AH A+R
Sbjct: 159 VVTSRVTDATPASFSAHAANR 179
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.1
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 7/121 (5%)
Frame = -1
Query: 351 DSSPVCPRRWPSSVRAAVSVATDMPSPRNMTTFRAYPLLPSYQARSP-------SSLWAS 193
D S V PSS VS+++ S + T + L S + S SS ++S
Sbjct: 140 DPSSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSS 199
Query: 192 RDQYSDSSSGAGVEGVCRERLDPTSSRW*PSLSNPYRRPQEPAASSERSVNKRTMSAESN 13
S SSS V P+SS S+ P+ SS S ++S+ S+
Sbjct: 200 AAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSS 259
Query: 12 T 10
+
Sbjct: 260 S 260
>SPCC1442.09 |trp3||anthranilate synthase component
I|Schizosaccharomyces pombe|chr 3|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 131 RRSLQTPSTPAPELESEYWSRDAQSELGERAWYDGSSGYARNVV--MFLGD 277
++ L++P P PE + + +A+S +GE DG + N+ +F GD
Sbjct: 184 KKKLESPEIPLPEQKKVHLGYEAKSNVGE----DGYKAFVSNLKEHIFNGD 230
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 3.7
Identities = 23/84 (27%), Positives = 32/84 (38%)
Frame = -1
Query: 318 SSVRAAVSVATDMPSPRNMTTFRAYPLLPSYQARSPSSLWASRDQYSDSSSGAGVEGVCR 139
SSV A +S D SP N + F P S + + S A + + SS+ VE
Sbjct: 121 SSVEATISPLKDTKSPSNASVFPIKP-TESKTSTTKDSETAKEEDDASSSTTKAVEATTS 179
Query: 138 ERLDPTSSRW*PSLSNPYRRPQEP 67
+ + S SN R P
Sbjct: 180 KASSAHTDTLATSASNSDRGASTP 203
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = -1
Query: 354 RDSSPVCPRRWPSSVRAAVSVATDMPSPRNMTTFRAYPLLPSYQARSPSSLWASRDQYSD 175
+ S+P+ SS ++ +S ++++ S + T +PS + +PSS S S
Sbjct: 479 QSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSV 538
Query: 174 SSSGAGV 154
SS + +
Sbjct: 539 LSSSSSI 545
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = -1
Query: 366 SKDNRDSSPVCPRRWPSSVRAAVSVATDMPSPRNMTTFRAYPLLPSYQARSPSSLWASRD 187
S++ D+ P + ++ + SV P P+ R+ + PS +P+S+ A
Sbjct: 574 SQNTFDTLPTISQGLLAATQPVTSVLNTSPLPKTPEKDRSLNVTPSSSTPTPASVLAPPS 633
Query: 186 QYSDSSS 166
S SSS
Sbjct: 634 SASLSSS 640
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 215 PPAHSGRRATSTPTPARGPALRASAGSASTPRHPG-GNRPY 96
PP++S A +TP + A A A +AS R G +PY
Sbjct: 63 PPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPY 103
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -2
Query: 218 APPAHSGRRATSTPTPARGPALRASAGSASTPRHPGGNRPYL 93
+P + + S+P P+R P R+S+ ++ + P +R L
Sbjct: 136 SPQLQNLKHQLSSPQPSRAPIDRSSSNPVTSSQQPPNDRSTL 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,432,035
Number of Sequences: 5004
Number of extensions: 43914
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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