Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19a18f
(741 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 36 0.030
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 36 0.030
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 31 1.1
AC024790-5|AAF60640.2| 119|Caenorhabditis elegans Hypothetical ... 30 1.5
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so... 30 1.5
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami... 29 3.5
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 29 4.6
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 29 4.6
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 29 4.6
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 29 4.6
AC024790-4|AAF60636.1| 121|Caenorhabditis elegans Hypothetical ... 29 4.6
Z95559-21|CAM35842.1| 440|Caenorhabditis elegans Hypothetical p... 28 6.0
Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 28 6.0
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 28 6.0
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 28 6.0
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 28 6.0
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 28 6.0
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 35.9 bits (79), Expect = 0.030
Identities = 36/115 (31%), Positives = 48/115 (41%), Gaps = 5/115 (4%)
Frame = -1
Query: 387 SPTVGKCSKDNRDSSPVCPRRWPSSVRAAVSVATDMP-SPRNMTTFRAYPLLPSYQARSP 211
SPT S + SP P+ PSS S T P SPR ++ + P P+Y SP
Sbjct: 1731 SPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSP 1790
Query: 210 SSLWASRDQYSDSS----SGAGVEGVCRERLDPTSSRW*PSLSNPYRRPQEPAAS 58
S S QYS +S + + PTS + P S+P P P+ S
Sbjct: 1791 -SYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSP--SSPTYSPASPSYS 1842
Score = 34.3 bits (75), Expect = 0.092
Identities = 40/134 (29%), Positives = 51/134 (38%), Gaps = 5/134 (3%)
Frame = -1
Query: 387 SPTVGKCSKDNRDSSPVCPRRWPSSVRAAVSVATDMP-SPRNMTTFRAY-PLLPSYQARS 214
SPT S + SP P PSS R + + T P SP T Y P P+Y S
Sbjct: 1648 SPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTS 1707
Query: 213 PSSLWASRDQYSDSSSGAGVEGVCRERLDPTSSRW*PSLS--NPYRRPQEPA-ASSERSV 43
PS + S YS SS P+ S P S +P P P S +
Sbjct: 1708 PS--YESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTY 1765
Query: 42 NKRTMSAESNTQHS 1
N + S+ Q+S
Sbjct: 1766 NPTSPRGFSSPQYS 1779
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 35.9 bits (79), Expect = 0.030
Identities = 36/115 (31%), Positives = 48/115 (41%), Gaps = 5/115 (4%)
Frame = -1
Query: 387 SPTVGKCSKDNRDSSPVCPRRWPSSVRAAVSVATDMP-SPRNMTTFRAYPLLPSYQARSP 211
SPT S + SP P+ PSS S T P SPR ++ + P P+Y SP
Sbjct: 1738 SPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSP 1797
Query: 210 SSLWASRDQYSDSS----SGAGVEGVCRERLDPTSSRW*PSLSNPYRRPQEPAAS 58
S S QYS +S + + PTS + P S+P P P+ S
Sbjct: 1798 -SYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSP--SSPTYSPASPSYS 1849
Score = 34.3 bits (75), Expect = 0.092
Identities = 40/134 (29%), Positives = 51/134 (38%), Gaps = 5/134 (3%)
Frame = -1
Query: 387 SPTVGKCSKDNRDSSPVCPRRWPSSVRAAVSVATDMP-SPRNMTTFRAY-PLLPSYQARS 214
SPT S + SP P PSS R + + T P SP T Y P P+Y S
Sbjct: 1655 SPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTS 1714
Query: 213 PSSLWASRDQYSDSSSGAGVEGVCRERLDPTSSRW*PSLS--NPYRRPQEPA-ASSERSV 43
PS + S YS SS P+ S P S +P P P S +
Sbjct: 1715 PS--YESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTY 1772
Query: 42 NKRTMSAESNTQHS 1
N + S+ Q+S
Sbjct: 1773 NPTSPRGFSSPQYS 1786
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 212 PAHSGRRATSTPTPARGPALRASAGSASTPRHPGG 108
P G+R+ TP PA P + AG P GG
Sbjct: 190 PGQGGQRSRGTPGPAGAPGPQGPAGGPGQPGQSGG 224
>AC024790-5|AAF60640.2| 119|Caenorhabditis elegans Hypothetical
protein Y47D7A.2 protein.
Length = 119
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 279 PSPRNMTTFRAYPLLPSYQARSPSSLWASRDQYSDSSS 166
P+P+ YP PSY A S ++S D D+ S
Sbjct: 40 PTPKKYPVAPTYPSTPSYSAPPAQSAYSSSDNQEDTES 77
>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
homolog protein 1 protein.
Length = 1493
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = -1
Query: 387 SPTVGKCSKDNRDSSPVCPRRWPS---SVRAAVSVATDMPSPRNMTTFRAYPLLP--SYQ 223
S + +K+N++ V R S +VR +V + +P PR + FRA P LP S +
Sbjct: 1393 SGSTSSATKENQEQLRVIFDREESHSPTVRLSVPLPPALPPPRGSSVFRAPPPLPPKSNR 1452
Query: 222 ARSPSSLWASRDQYSDSSS 166
S S +S + D S
Sbjct: 1453 HNSNSPTLSSEQPFEDPMS 1471
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -2
Query: 212 PAHSGRRATSTPTPARGPALRASAGSASTPRHPGG 108
P G+R+ TP P+ P + AG P GG
Sbjct: 190 PGQGGQRSRGTPGPSGAPGPQGPAGGPGQPGQSGG 224
>Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical
protein T01G1.3 protein.
Length = 1083
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 512 SGVAPRVPTHRWCPG*PLHRTGRRRPSKPSPLP 414
+G P P+H CP P+ + RR S +P+P
Sbjct: 809 NGFNPYNPSHSQCPPPPMDYSNNRRNSNLTPMP 841
>Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical
protein T01G1.3 protein.
Length = 1083
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 512 SGVAPRVPTHRWCPG*PLHRTGRRRPSKPSPLP 414
+G P P+H CP P+ + RR S +P+P
Sbjct: 809 NGFNPYNPSHSQCPPPPMDYSNNRRNSNLTPMP 841
>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
protein 10 protein.
Length = 2302
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 503 APRVPTHRWCPG*PLHRTGRRRPSKPSPLPGRLG-SRS*KVRQLENVRKTIGTP 345
+P VP P P H+T +R + PSP+P LG + Q + +R + TP
Sbjct: 1518 SPTVPKIITVPE-PAHQTDSQRVTAPSPVPRILGVTIPESAHQTQTLRSAVHTP 1570
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 191 ATSTPTPARGPALRASAGSASTPRHPG 111
+T+T TP GP + A+ + +TP PG
Sbjct: 2026 STTTTTPGTGPTVTAAQTTTTTPSTPG 2052
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 191 ATSTPTPARGPALRASAGSASTPRHPG 111
+T+T TP GP + A+ + +TP PG
Sbjct: 2026 STTTTTPGTGPTVTAAQTTTTTPSTPG 2052
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 28.7 bits (61), Expect = 4.6
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = -1
Query: 372 KCSKDNRDSSPVCPRRWPSSVR-AAVSVATDMPSPRNMTTFRAYPLLPSYQARSPS---S 205
K S R SPV RR PSS+R + V P + + + P + RSPS
Sbjct: 407 KSSPKQRQDSPVRRRRSPSSIRKESQRVRKHSPEQKRNGRHDSRSVSPVRRRRSPSPDNR 466
Query: 204 LWASRDQYS 178
SR QYS
Sbjct: 467 QLGSRKQYS 475
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 28.7 bits (61), Expect = 4.6
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = -1
Query: 372 KCSKDNRDSSPVCPRRWPSSVR-AAVSVATDMPSPRNMTTFRAYPLLPSYQARSPS---S 205
K S R SPV RR PSS+R + V P + + + P + RSPS
Sbjct: 407 KSSPKQRQDSPVRRRRSPSSIRKESQRVRKHSPEQKRNGRHDSRSVSPVRRRRSPSPDNR 466
Query: 204 LWASRDQYS 178
SR QYS
Sbjct: 467 QLGSRKQYS 475
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 191 ATSTPTPARGPALRASAGSASTPRHPG 111
+T+T TP GP + A+ + +TP PG
Sbjct: 2026 STTTTTPGTGPTVTAAQTTTTTPSTPG 2052
>AC024790-4|AAF60636.1| 121|Caenorhabditis elegans Hypothetical
protein Y47D7A.7 protein.
Length = 121
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -1
Query: 279 PSPRNMTTFRAYPLLPSYQARSP--SSLWASRDQYSDSSS 166
P+P+ YP PSY A+ P S + S D D+ S
Sbjct: 40 PTPKKYPVAPTYPSTPSYSAQPPPAPSAYTSSDNQEDTES 79
>Z95559-21|CAM35842.1| 440|Caenorhabditis elegans Hypothetical
protein Y41E3.10b protein.
Length = 440
Score = 28.3 bits (60), Expect = 6.0
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -1
Query: 537 CAASVAAVQWCRATCPDTPMVPRL 466
C A+++ +++ R+ CPD P+ R+
Sbjct: 375 CLAAISEIEYLRSICPDPPLPNRI 398
>Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical
protein C50B6.4 protein.
Length = 291
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -2
Query: 212 PAHSGRRATSTPTPARGPALRASAGSASTPRHPGG 108
P G+R+T TP A P AG P GG
Sbjct: 192 PGQDGQRSTGTPGAAGAPGPAGPAGQDGQPGSDGG 226
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -2
Query: 212 PAHSGRRATSTPTPARGPALRASA-GSASTPRHPG 111
P H G+ + P RGPA A A G P +PG
Sbjct: 158 PGHPGQGGSQGPAGPRGPAGDAGAPGQVGAPGNPG 192
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -2
Query: 212 PAHSGRRATSTPTPARGPALRASAGSASTPRHPGG 108
P G+R+ P P+ P AG P H GG
Sbjct: 193 PGRGGQRSRGLPGPSGRPGPPGPAGGPGQPGHSGG 227
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 28.3 bits (60), Expect = 6.0
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = -1
Query: 225 QARSPSSLWASRDQYSDSSSGAGVE-GVCRERLDPT----SSRW*PSLSNPY-RRPQEPA 64
++RSPS SRD+ D SS + R R P+ SS W S SN + RR + +
Sbjct: 46 RSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSHW--SSSNRHSRRRRSRS 103
Query: 63 ASSERSVNKRTMSAESNTQHS 1
S ER N R SN ++
Sbjct: 104 YSRERDRNSRRDDRRSNLSNN 124
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 28.3 bits (60), Expect = 6.0
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = -1
Query: 225 QARSPSSLWASRDQYSDSSSGAGVE-GVCRERLDPT----SSRW*PSLSNPY-RRPQEPA 64
++RSPS SRD+ D SS + R R P+ SS W S SN + RR + +
Sbjct: 74 RSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSHW--SSSNRHSRRRRSRS 131
Query: 63 ASSERSVNKRTMSAESNTQHS 1
S ER N R SN ++
Sbjct: 132 YSRERDRNSRRDDRRSNLSNN 152
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 28.3 bits (60), Expect = 6.0
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = -1
Query: 225 QARSPSSLWASRDQYSDSSSGAGVE-GVCRERLDPT----SSRW*PSLSNPY-RRPQEPA 64
++RSPS SRD+ D SS + R R P+ SS W S SN + RR + +
Sbjct: 132 RSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSHW--SSSNRHSRRRRSRS 189
Query: 63 ASSERSVNKRTMSAESNTQHS 1
S ER N R SN ++
Sbjct: 190 YSRERDRNSRRDDRRSNLSNN 210
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 28.3 bits (60), Expect = 6.0
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = -1
Query: 225 QARSPSSLWASRDQYSDSSSGAGVE-GVCRERLDPT----SSRW*PSLSNPY-RRPQEPA 64
++RSPS SRD+ D SS + R R P+ SS W S SN + RR + +
Sbjct: 133 RSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPSSANGSSHW--SSSNRHSRRRRSRS 190
Query: 63 ASSERSVNKRTMSAESNTQHS 1
S ER N R SN ++
Sbjct: 191 YSRERDRNSRRDDRRSNLSNN 211
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,318,009
Number of Sequences: 27780
Number of extensions: 282315
Number of successful extensions: 1148
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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