Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19a17f
         (755 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q897U1 Cluster: Conserved protein; n=5; Clostridium|Rep...    37   0.47 
UniRef50_Q2AHQ5 Cluster: Divalent cation transport-related prote...    36   1.4  
UniRef50_Q4XIQ4 Cluster: Putative uncharacterized protein; n=1; ...    34   4.4  
UniRef50_Q5F819 Cluster: Putative uncharacterized protein; n=1; ...    33   5.8  
UniRef50_Q8IFN0 Cluster: Putative uncharacterized protein PFD111...    33   7.6  
UniRef50_Q2NIC8 Cluster: Member of asn/thr-rich large protein fa...    33   7.6  

>UniRef50_Q897U1 Cluster: Conserved protein; n=5; Clostridium|Rep:
           Conserved protein - Clostridium tetani
          Length = 565

 Score = 37.1 bits (82), Expect = 0.47
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = -2

Query: 301 ISINYSR-ISNTAGPLVLLKSPKLNIQNVYPYKIIYIFSSKNETVQESFSYVCRPNYSFI 125
           +   +SR + +T   L L   P L    ++P+ I   F SKNE+V ++F+   + NY F 
Sbjct: 329 VFFRFSRNMISTERKLKLKLYPTLAFAVIFPFIIFIGFFSKNESVSQAFNEFSKGNYYFS 388

Query: 124 MFCSLQTLVLPIK 86
           ++ S+  L   I+
Sbjct: 389 IYLSILMLTASIE 401


>UniRef50_Q2AHQ5 Cluster: Divalent cation transport-related protein;
           n=1; Halothermothrix orenii H 168|Rep: Divalent cation
           transport-related protein - Halothermothrix orenii H 168
          Length = 180

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -2

Query: 241 PKLNIQNVYPYKIIYIFSSKNETVQESFSYVCRPNYSFIMFCSLQTLVLPIK 86
           PKL  Q  Y Y + ++FS + + V E  S +   NY      S  T+  PIK
Sbjct: 100 PKLENQGKYIYIVCHLFSYEKKVVSEQLSIILGKNYVITFLESTDTVFEPIK 151


>UniRef50_Q4XIQ4 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 45

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 250 LKSPKLNIQNVYPYKIIYIFSSKNETVQES 161
           LK+P   + N Y Y I Y+F+S NE ++ES
Sbjct: 15  LKTPDNMVHNFYKYGITYVFNSNNEHLKES 44


>UniRef50_Q5F819 Cluster: Putative uncharacterized protein; n=1;
           Neisseria gonorrhoeae FA 1090|Rep: Putative
           uncharacterized protein - Neisseria gonorrhoeae (strain
           ATCC 700825 / FA 1090)
          Length = 94

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
 Frame = -2

Query: 319 IMCEFIISINYSRISNT-AGPLVLLKSPKL----NIQNVYPYKIIYIFSSKNETVQESFS 155
           + C+F  +++ +  ++    P+ L KS K+    N+ N+YPY+   IF+SK  TV +  S
Sbjct: 1   MQCKFFTTLSKTIPTHLPTSPICLNKSYKILNYINLYNIYPYR---IFNSK--TVLQDLS 55

Query: 154 YVCRPNYSFIMFCSLQTLVLP 92
                N+SF  F  L  + +P
Sbjct: 56  IRPPENFSFKPFSHLYDIAIP 76


>UniRef50_Q8IFN0 Cluster: Putative uncharacterized protein PFD1115c;
           n=2; Plasmodium|Rep: Putative uncharacterized protein
           PFD1115c - Plasmodium falciparum (isolate 3D7)
          Length = 1612

 Score = 33.1 bits (72), Expect = 7.6
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = -1

Query: 599 KECTMLIFFSNNA*KIL*INKENITHTTIYLTQHIHKNI 483
           K+C+  +FF N   K L +NK+N+ H T    +HI KNI
Sbjct: 215 KDCSYSVFFYNLFIKGLYLNKQNLEHAT--EKEHIQKNI 251


>UniRef50_Q2NIC8 Cluster: Member of asn/thr-rich large protein family;
            n=1; Methanosphaera stadtmanae DSM 3091|Rep: Member of
            asn/thr-rich large protein family - Methanosphaera
            stadtmanae (strain DSM 3091)
          Length = 1909

 Score = 33.1 bits (72), Expect = 7.6
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
 Frame = -2

Query: 346  NVIVFDNRTIMCEFIISINYSRISNTAGPLVLLKSPKLNIQN---VYPYKIIYIFSSKNE 176
            N+I+ D    + EF   ++Y+  +NT  PL+ LK+ ++N++N   V   + I I S +N 
Sbjct: 1317 NIILLDAENTVGEFS-RLSYNITANTTTPLIQLKNSQMNLKNNNIVVNTRNIPIISVQNS 1375

Query: 175  TVQESFSYV 149
             V  + +Y+
Sbjct: 1376 DVNITGNYL 1384


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 678,408,702
Number of Sequences: 1657284
Number of extensions: 13250213
Number of successful extensions: 28912
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28899
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)