Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19a17f
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.8  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   6.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.8  

>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 307 FIISINYSRISNTAGPLVLLKSPKLNIQNVYPYKIIYIFSS 185
           FI++I+ S + NT+G   LL+S   +I+ V      + FS+
Sbjct: 39  FILTIDRSIVENTSGRSTLLRSVSRSIKYVLSKPGAFFFSA 79


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 280 ISNTAGPLVLLKSPKLNIQNVY 215
           ISN  G +  L + K N+QN+Y
Sbjct: 320 ISNNIGQIAYLHAQKHNVQNIY 341


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +2

Query: 371  KLHYRSIILKTNNINLFSIRPQTLNNNKSFPIDSKQRIYFYVCVVS 508
            K+++  + L+   ++L  +R + +NN     + S     F+V V+S
Sbjct: 2662 KVYFEVLNLQPTEMHLSFVRTERINNTDGTVVSSHNPFVFFVNVLS 2707


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,742
Number of Sequences: 5004
Number of extensions: 64076
Number of successful extensions: 172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)