Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19a17f
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1263 + 25279899-25279985,25280263-25282372,25282700-252827...    28   7.0  
07_03_0039 - 12718972-12720699                                         28   7.0  

>07_03_1263 +
           25279899-25279985,25280263-25282372,25282700-25282793,
           25283178-25283314,25283419-25283454,25283602-25283642,
           25284036-25284125,25284229-25284284,25284947-25285030,
           25285072-25285150
          Length = 937

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 426 IENRLILFVFNIIDL*CSFGEYCDNI 349
           I   L+LF + II L C F  +CDN+
Sbjct: 868 ISTSLLLFFYLIIQLRCMFLVFCDNL 893


>07_03_0039 - 12718972-12720699
          Length = 575

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -2

Query: 283 RISNTAGPLVLLKSPKLNIQNVYPYKIIYIFSSKNETVQESFSYVCRPNYSFIMFCSLQT 104
           R  +  G L  LKS     +N    KII +  S  +T+QE F  +      + M C + +
Sbjct: 398 RAQHIDGKLEFLKSIGYG-ENKIATKIIAVLHSNRDTLQERFDCLLERGLEYKMLCQIVS 456

Query: 103 LVLP--IKKGRK 74
            V P  + +G+K
Sbjct: 457 -VFPKILNQGKK 467


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,810,155
Number of Sequences: 37544
Number of extensions: 304207
Number of successful extensions: 453
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)