Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19a17f
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory recep...    29   3.6  
U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant respons...    29   3.6  
Z79754-1|CAB02090.1|  457|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>U49449-1|AAB00117.1|  339|Caenorhabditis elegans olfactory receptor
           Odr-10 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +2

Query: 419 FSIRPQTLNNNKSFPIDSKQRIYFYVCV--VSNKW*CV*CFLY*FKVSFMHYLKKILALC 592
           F +RP     N +F + S++R  +   +  +++ + C  CF   F VS +H++ +  A C
Sbjct: 61  FILRPIMHIENTTFFLISRKRFNYSTKLGKINSAFYCA-CFATSFVVSGVHFVYRYFATC 119

Query: 593 TPSL 604
            P+L
Sbjct: 120 KPNL 123


>U42830-6|AAC48279.2|  339|Caenorhabditis elegans Odorant response
           abnormal protein10 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +2

Query: 419 FSIRPQTLNNNKSFPIDSKQRIYFYVCV--VSNKW*CV*CFLY*FKVSFMHYLKKILALC 592
           F +RP     N +F + S++R  +   +  +++ + C  CF   F VS +H++ +  A C
Sbjct: 61  FILRPIMHIENTTFFLISRKRFNYSTKLGKINSAFYCA-CFATSFVVSGVHFVYRYFATC 119

Query: 593 TPSL 604
            P+L
Sbjct: 120 KPNL 123


>Z79754-1|CAB02090.1|  457|Caenorhabditis elegans Hypothetical
           protein F25H2.1 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 604 ISVRNFILLRPRNFRKKGYKVFASRINIKIKNLNVTFSNRSY 729
           + ++     +PR FRK+ YKV   RIN+   +L    + + +
Sbjct: 231 LPIKRITHCQPRRFRKQLYKVIIFRINVSKLSLKAKVTVKEF 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,654,492
Number of Sequences: 27780
Number of extensions: 349182
Number of successful extensions: 750
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)