Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19a14r
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.48 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.48 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.64 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.64 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   0.84 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.0  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +1

Query: 1   LVLSEDGEELFHEDVYVNTVFSKSINFGLELLTLPQSTEHGVPFFALEVLKSYSE 165
           LV+SEDG E F          S+   F  E L LP+  + G+P+  L V+  + +
Sbjct: 579 LVVSEDGSETFKYS-------SQPYGFP-ERLLLPKGKKEGMPYNVLVVVSPFDD 625


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +1

Query: 1   LVLSEDGEELFHEDVYVNTVFSKSINFGLELLTLPQSTEHGVPFFALEVLKSYSE 165
           LV+SEDG E F          S+   F  E L LP+  + G+P+  L V+  + +
Sbjct: 579 LVVSEDGSETFKYS-------SQPYGFP-ERLLLPKGKKEGMPYNVLVVVSPFDD 625


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 355 VIFQEIDHSFEFRQVFHLIDQVSEVLRGEVVKRTPELLKFDVLLEQIIDI 504
           +I++ +    E R +  L+   + + R    +  P  +KF + L+QIID+
Sbjct: 45  IIYESLCGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDV 94


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 355 VIFQEIDHSFEFRQVFHLIDQVSEVLRGEVVKRTPELLKFDVLLEQIIDI 504
           +I++ +    E R +  L+   + + R    +  P  +KF + L+QIID+
Sbjct: 45  IIYESLCGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDV 94


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = -3

Query: 324 FNEMM-ETIGERVKRARQTLSGRDFTSYINDIIDVFPKDKLAALYEQKLAE---DEEFRV 157
           F E+  + +   V+  ++T S  +  + +  II   P DKL+ +   KLA    D  F+V
Sbjct: 248 FEEIQNQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLATRYIDFLFQV 307

Query: 156 ALENLQSEE 130
              N+++ E
Sbjct: 308 LHCNMENTE 316


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -3

Query: 237 DIIDVFPKDKLAALYEQKLAEDEEFRVALENLQSEE 130
           D++ V P+D   A+ + KLA +  + V +E ++++E
Sbjct: 81  DVVAVDPEDMYLAVKDNKLASNAGYNV-IEQVRTKE 115


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -3

Query: 237 DIIDVFPKDKLAALYEQKLAEDEEFRVALENLQSEE 130
           D++ V P+D   A+ + KLA +  + V +E ++++E
Sbjct: 81  DVVAVDPEDMYLAVKDNKLASNAGYNV-IEQVRTKE 115


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -3

Query: 237 DIIDVFPKDKLAALYEQKLAEDEEFRVALENLQSEE 130
           D++ V P+D   A+ + KLA +  + V +E ++++E
Sbjct: 81  DVVAVDPEDMYLAVKDNKLASNAGYNV-IEQVRTKE 115


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 379 SFEFRQVFHLIDQVSEVLRGEVVKRTPELLKFDVLLEQIIDI 504
           S E R +  L+D  + + R    +  P +L F + L QIID+
Sbjct: 22  SHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDV 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,177
Number of Sequences: 438
Number of extensions: 3593
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)