Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19a14f
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 31 0.12
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 29 0.84
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 28 1.1
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 28 1.5
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 27 1.9
SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 27 3.4
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 3.4
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 26 4.5
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 26 4.5
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 26 4.5
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 26 4.5
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p... 26 5.9
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 26 5.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.9
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 7.8
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 7.8
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 7.8
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 45 FMGLIALGFSVPRPKKSFVENFGDFLDIIKDEAGNDIDNLFE 170
F L + SVPR K++ + F D L+++ + GND+ FE
Sbjct: 2625 FAALEYIKDSVPRSKRNTGKMFDDSLELVPENLGNDLKVYFE 2666
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 28.7 bits (61), Expect = 0.84
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 186 EEFRRSLDYLTTKDFRDLIYEMEDLPEFKAVVDFLENDNIEIHFFIDIFN-EMMETIGER 362
EE RS +YL TK L+ +ED K + D LEN + ID N E ++ + E
Sbjct: 266 EEKERSKNYLFTKIASPLLSVVEDELLSKHLDDLLENQSTGFFSMIDSSNFEGLQLVYES 325
Query: 363 VKR 371
R
Sbjct: 326 FSR 328
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 173 LLEQIIDIITSLVLNDVKEITKVFYEALLRSGHREAKSD 57
++E I +L DVK++ +++Y+ L++ R + D
Sbjct: 1023 IIEHFIAAPKKELLPDVKQMVRIYYQRLMKDAKRNGRDD 1061
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = +3
Query: 90 KSFVENFGDFLDIIKDEAGNDIDNLFEQYIEFEEFRRSLDYLTTKDFRDLIYEMEDLPEF 269
KSF ++ FLD +K++ + I +Q + +E LD + KD + DLP F
Sbjct: 329 KSFYQSGNFFLDFLKEKFPSTILETLQQLVSWE---IQLDSVGFKDIAVYQGYLLDLPHF 385
Query: 270 KAVVDFLENDNIEIH 314
+ LE+ + +H
Sbjct: 386 QVPDSELEHLSSLLH 400
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -1
Query: 368 FNSLADSFHHFVENINEEMDLNVVIFQEIDHSFEFRQVFHLIDQVSEVLRGEVVKRTPE 192
F +L D+ FVE +NE L+ + S + R++ ++ + S V + E+ K E
Sbjct: 509 FRTLIDAIQPFVETLNEGKGLDAAAKAATEGSEQTRKMDAVVGRASYVAKEELHKLDSE 567
>SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 242
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 467 LFVQGCELILGEYIDNIVNVRSEVASAKSL-SGPFNSLADSFHHFVENINE 318
++VQGC L L + I+ I + + A L G +N + HF E
Sbjct: 50 IYVQGCSLCLAKAINAITHEKGFPKEALDLFLGAYNVITPELAHFEARCKE 100
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.6 bits (56), Expect = 3.4
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Frame = +3
Query: 120 LDIIKDEAGNDIDNLFEQYIEFEEFRRSLDYLTTKDFRDLIYEMEDLPEFKAVVDFLEND 299
LDI KDE +++D L+ + E+ + L KD +L E+ + V+
Sbjct: 755 LDIRKDEIQSELDTLYLRRANLEKLQ-----LLVKDISNLEEEIRTIDRETEVLRIELPS 809
Query: 300 NIEIHFFIDIFNE---MMETIGERVKRARQT-LSGRDFTSYINDIIDVFPKDKL 449
+I H +I+ E ++E G K+ +T L F I+D + + KL
Sbjct: 810 SIAHHNLDEIYAEREKLLEKRGYLRKQIERTKLEETSFKKKIDDAVLANNEQKL 863
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Frame = -1
Query: 155 DIITSLVLNDVKEITKVFYEAL--LRSGHREAKSDQAHK-HNSDFHFSR 18
++++S+V D+ + T+V Y + ++S HRE KS HK + DF SR
Sbjct: 462 ELLSSIV--DICQPTEVVYMSREDMKSSHREKKSIYQHKEYMPDFLSSR 508
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 26.2 bits (55), Expect = 4.5
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Frame = +3
Query: 240 IYEMEDLPEFKAVVDFLE-NDNIEIHFFIDIFNEMMETIGERVKRARQTLSGRDFTS-YI 413
+++ L + +D L+ + + + D FN IGE R + D Y+
Sbjct: 375 VFDSLKLTSYDLSIDTLDMHAHTDTFHRFDKFNLKYNPIGESRLRTIFLKTDNDINGRYL 434
Query: 414 NDIIDVFPKDKLAALYEQKLAEDEEFRVALENLQSEEWDAVFGALWESEQFKAEVDTLAE 593
++ K+ L QK + E+R+++ EEWD + + ++E F V L +
Sbjct: 435 AELT----KEVFTDLRTQKY-QMAEYRISIYGRNREEWDKLAAWIIDNELFSPNVRWLIQ 489
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/73 (24%), Positives = 35/73 (47%)
Frame = -1
Query: 233 SEVLRGEVVKRTPELLKFDVLLEQIIDIITSLVLNDVKEITKVFYEALLRSGHREAKSDQ 54
S VL +VK++PE++K + + I I + V++ +K+ E RS + + +
Sbjct: 161 SIVLVEGIVKKSPEIIKSATVQDAEIHISSIYVISPIKKNLPFLVEDAGRS-EEQIRESE 219
Query: 53 AHKHNSDFHFSRI 15
+ D F R+
Sbjct: 220 ENAAEGDSKFVRV 232
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = -1
Query: 338 FVENINEEMDLNVVIFQEIDHSFEFRQVFHLIDQVSEVL 222
F E N +D + IF+ I+H+F F +F ++ + ++
Sbjct: 1063 FNEINNRRLDNKLNIFERINHNFLFIAIFVIVAGIQVII 1101
>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 243 YEMEDLPEFKAVVDFLENDNIEI 311
+EMEDL E + +D+LE + I
Sbjct: 7 FEMEDLSELVSYMDYLETQRLTI 29
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 353 DSFHHFVENINEEMDL--NVVIFQEIDHSFEFRQVFHLIDQVSE 228
D+F F+E I +E+D ++++ DH E + ++ +V E
Sbjct: 424 DAFAPFIEQIEDEVDTIDSMILSIHYDHVMEVKPQERMLQRVGE 467
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = -1
Query: 446 LILGEYIDNIVNVRSEVASAKSLSGPFNSLADSFHHFVENINE 318
L ++ID+ +++ +LS PF + ++S H ++N+ +
Sbjct: 123 LSANDFIDSTSEALTKIVDVDTLSAPFGNDSNSRPHSLKNVEK 165
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.4 bits (53), Expect = 7.8
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +3
Query: 357 ERVKRARQTLSGRDFTSYINDIIDVFPKDKLAALYEQKLAEDEEFRVALENLQSEEWDAV 536
+R +R +LS + S N +DV PKDK Q+ AE VA + + + A
Sbjct: 143 DRTERVGASLSVSEIQSE-NPRVDVIPKDKAVENNHQRNAEKP---VASDKITDAKLLAR 198
Query: 537 FGAL--WESEQFKAEVDTLAEHGID 605
+ W+ + K E EH ++
Sbjct: 199 LERVRAWKESKAKQEASKKEEHKLN 223
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 7.8
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = +3
Query: 168 EQYIEFEEFRRSLDYLTTKDFRDLIYEMEDLPEFKAVVDF-LENDNIEIHFFIDIFNEMM 344
+Q IE+ EF LD T+ F+D ++ P+ + D + ND + F+ ++
Sbjct: 1698 DQDIEYNEFYSQLDTSTSDIFQDT--SVDGFPDLQVSSDINVRNDRLS--SFVMSSEDLR 1753
Query: 345 ETIG--ERVKRARQTLSGRDFTSYINDII 425
+ G E +T+S S IN ++
Sbjct: 1754 SSDGHPENSDSVLETISSVHHRSPINQVV 1782
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 459 YEQKLAEDEEFRVALENLQSEEWDAV 536
+E+ L ED+E + L +L+S WD +
Sbjct: 91 FEKCLKEDDEEWIELWDLESRTWDLI 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,666,705
Number of Sequences: 5004
Number of extensions: 53928
Number of successful extensions: 246
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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