Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19a11r
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    39   7e-04
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    33   0.046
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    30   0.43 
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    29   0.99 
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    26   5.3  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   7.0  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    26   7.0  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    26   7.0  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.2  
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    25   9.2  

>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = -3

Query: 675 YMHTLIVGLACIPTSLWLPLCVH-KLGAKFFLIFSLSFAGVVTVGLYYVQNSIQNLVLSC 499
           Y ++LIV    +P SL   + V  ++G K  L  SL   GV        + S   L  +C
Sbjct: 409 YRNSLIVSAIGVPGSLIAGVLVEFRIGRKGTLCLSLILTGVFLFASTTAKTSNAYLGWNC 468

Query: 498 IFEALTSLAISLVFCVLVDLFPTNLRVMAAALSLTAGR 385
            F   + +   +++    ++FP+ +R  A  L+ +A R
Sbjct: 469 TFSFFSDIMYGVLYAYTPEVFPSKVRGTAVGLAASANR 506


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 33.1 bits (72), Expect = 0.046
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
 Frame = -3

Query: 672 MHTLIVGLACIPTSLWLPLCVHKLGAKFFLIFSLSFAGVVTVGLYYVQNSIQNLVLSCIF 493
           M   + G A  P  LW P+    +G K  LI  +    + ++ +  V   +Q +++   F
Sbjct: 139 MSLYVCGFASGPI-LWAPIS-ELVGRKIPLIVGMFMFSIFSIAVA-VAKDVQTVMICRFF 195

Query: 492 EAL-TSLAISLVFCVLVDLFPTNLRVMAAALSLTAGRGGGLIGNLSFGYL 346
                S  +S+V     D+F    R  A  +       G LIG ++ G+L
Sbjct: 196 SGFCASSPLSVVAAAFADMFDNKTRGPAVCIFACITFAGPLIGPIAGGFL 245


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
 Frame = -3

Query: 696 KVIDQSVYMHTLIVGLA--CIPTSLW-LPLCVHKLGAKFFLIFSLSFAGVVTVGLYYVQN 526
           K+  Q+     LIVG A  C+  S+  L L + +LG+KF+L FS     V+   L+ VQ 
Sbjct: 195 KIASQASKTELLIVGTAYACMLISIVSLYLKMRRLGSKFWLFFS-----VLLSTLFSVQF 249

Query: 525 SIQNLVLSCIFEALTSLAISLVFCVLV 445
           ++  +  S +  +L SL  SL F + V
Sbjct: 250 AMTLVRASGVRISLVSLIESLPFLINV 276


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = -3

Query: 627 WLPLCVHKLGAKFFLIFSLSFAGVVTVGLYYVQNSIQNLVLSCIFEALTSLAISLVFC-- 454
           W   CV     + FL+F  + + ++ +  Y     +QN+ +   +E+   L IS   C  
Sbjct: 432 WTGNCVGARNHRTFLLFVFTLSTLIPIYFYVAFYYLQNIPIQKKYESYRCLFISGTICQW 491

Query: 453 VLVDLFPTNLRVMAAALSL 397
            L D+F     V+ A+L+L
Sbjct: 492 SLKDMF-----VLVASLTL 505


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 442 PVPYKSQGNGCRVIADCWSRWRSD 371
           P PY +  N C+++ D +  W+ D
Sbjct: 451 PTPYPALINPCKILPDYFPSWKPD 474


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 98  TSAYEMKELNSDTINNTCLHYLH 166
           T   EM ++N D I   C HY H
Sbjct: 397 TICMEMFKINDDVIQLPCKHYFH 419


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 418 NGCRVIADCWSRW 380
           N C V+  CW++W
Sbjct: 102 NACTVVVGCWNKW 114


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 679 RLHAHPDCRSRLHSHLALATPLR 611
           RL + PDC +R H++   A PLR
Sbjct: 167 RLLSSPDCDARQHANSDTAIPLR 189


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 289  CYTLLLLAKDGTGSLGLNIIYIVQLEFVNRSYNEW 185
            C   LLL+  G GSL      ++ LE ++R+YN +
Sbjct: 1641 CVKELLLSYLGEGSLAAMFYSLLLLEGLSRTYNSF 1675


>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = -3

Query: 756 ATCPSIVVVDEASSDPFD-CEKVIDQSVYMHTLIVGLACIPTSLWLPLCVHKLGAKFFLI 580
           +T PS+   D ++ D  D C KV+     +H      A +   L  P         F   
Sbjct: 72  STLPSLG--DGSNRDYLDSCRKVLAGMFLVH--YANRALVSPLLMAPQVSPMHWTVFVSA 127

Query: 579 FSLSFAGVVTVGLYYVQNSIQNLVLSCI 496
              +F   +++GLY VQ S+Q+  +S I
Sbjct: 128 VLFNFLNGMSIGLYLVQASVQHHPVSII 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,431
Number of Sequences: 5004
Number of extensions: 61460
Number of successful extensions: 194
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)