Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19a10r
(847 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo... 213 4e-56
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 33 0.067
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 30 0.47
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 29 0.83
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 2.5
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.4
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 4.4
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 26 7.7
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3... 26 7.7
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 26 7.7
>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 213 bits (519), Expect = 4e-56
Identities = 112/237 (47%), Positives = 153/237 (64%), Gaps = 4/237 (1%)
Frame = -3
Query: 842 CAEXHSKKITKLLDKIKMNMLSIXT-KRSAAAYEAKAFVDELVPVPVPQKRGAP-VIFAE 669
CAE HS +D+ + +I + KR+ A KAF E+VPV VP RG P + E
Sbjct: 166 CAEEHS------IDRASQDAFAISSYKRAQNAQATKAFEQEIVPVEVPVGRGKPNKLVTE 219
Query: 668 DEEYKRVNFEKFTKLSTVFQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARI 489
DEE K +N +K + VF K NGTVTA NASTLNDG K L +KP+A+I
Sbjct: 220 DEEPKNLNEDKLKSVRAVF-KSNGTVTAANASTLNDGASALVLMSAAKVKELGLKPLAKI 278
Query: 488 VGFADGECDPIDFPIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPS 309
+G+ + DP F +P++AIPK L+ G+ V +EINEAFSVVAVAN K+LGLDP
Sbjct: 279 IGWGEAAQDPERFTTSPSLAIPKALKHAGIEASQVDYYEINEAFSVVAVANTKILGLDPE 338
Query: 308 KINVHGGAVSLGHPIGMSGARIVVHLCHAL--KKGEKGVASICNGGGGASSVMIEKM 144
++N++GG V++GHP+G SG+RI+ L + L K + GVA++CNGGGGASS++IE++
Sbjct: 339 RVNINGGGVAMGHPLGSSGSRIICTLAYILAQKDAKIGVAAVCNGGGGASSIVIERV 395
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 32.7 bits (71), Expect = 0.067
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 7/145 (4%)
Frame = +1
Query: 283 TAPPCTLIFDGSNPNNF*FATATTLKASFISHNATSSFL--TPVFSNNLGMA--TAGAIG 450
+A P + S+ + A+++T +S S + TSS L + + S++L + T+ ++
Sbjct: 101 SASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLA 160
Query: 451 KSMGSHSPSANPTIRAIGLTFNLLAAS-AVINTKAAAPSFNVEALPAVTVPFSFWNTVDN 627
S + + SA PT A + + AAS + ++ A+ S N T N
Sbjct: 161 SSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASN 220
Query: 628 FVNFSKL--TLLYSSSSANITGAPL 696
S L + L S++SA T + +
Sbjct: 221 SATSSSLASSSLNSTTSATATSSSI 245
Score = 31.5 bits (68), Expect = 0.16
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Frame = +1
Query: 340 ATATTLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSHSPSANPTIRAIGLTFNL 519
+T++T +S S ATS+ TP+ S N AT+ + +S SA + N
Sbjct: 337 STSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANS 396
Query: 520 LAASAVINTKAAAPSFNVEA-LPAVTV---PFSFWN-TVDNFVNFSKLTLLYSSSSANIT 684
+++V +T APS+N + LP +V P S N T + + L+ + S+++ + +
Sbjct: 397 TTSTSVSST---APSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLSSVNSTTATSAS 453
Query: 685 GAPL 696
PL
Sbjct: 454 STPL 457
Score = 28.3 bits (60), Expect = 1.4
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Frame = +1
Query: 340 ATATTLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSHSPSANPTIRAIGLTFNL 519
AT+++L ++ S++ATSS L N+ ATA + S + S SA + +L
Sbjct: 176 ATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSS--------SL 227
Query: 520 LAASAVINTKAAAPSFNVEALPAVTVPFSFWN--TVDNFVNFSKLTLLYSSSSANITGAP 693
++S T A A S ++ + + + P + N T + + + Y++SS + P
Sbjct: 228 ASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTP 287
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 29.9 bits (64), Expect = 0.47
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -3
Query: 428 IPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSKINVHGGAVSL 276
+ KL +TG + ++L ++NE S KL DPS++ + G V L
Sbjct: 628 LTKLNYETGKTENRLSLLQLNEQLSCSPADRAKLTLFDPSRLLIFKGVVKL 678
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 29.1 bits (62), Expect = 0.83
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = +1
Query: 325 NNF*FATATTLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSH 468
N F F TA A N S LTPVFS + MA+A A ++ +H
Sbjct: 259 NQFSFNTAANPFAFAKKENEESKPLTPVFSFSTTMASADASKETKQTH 306
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -3
Query: 347 AVANQKLLGLD-PSKINVHGGAVSLGHPIGMSGARIVVHLCHALK 216
+++++ LL +D P+ + + G L + S A + VH+CHA+K
Sbjct: 194 SMSSRSLLIMDIPTTMRSNNGLSILASRLKSSEAPMHVHICHAIK 238
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/63 (25%), Positives = 37/63 (58%)
Frame = +1
Query: 304 IFDGSNPNNF*FATATTLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSHSPSAN 483
I+ ++ ++ +TAT +S S +++SS TP+ S+++ + + + S+ S S S++
Sbjct: 133 IYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPI-SSSITSSISSSASSSVSSSSASSS 191
Query: 484 PTI 492
+I
Sbjct: 192 GSI 194
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 683 VIFAEDEEYKRVNFEKFTKLSTVFQKENGTVTAGNASTLNDG 558
+IF+ED+E ++F++F S + N + AS L G
Sbjct: 445 LIFSEDKEQSSISFQEFVSFSPLSSTLNFALFHQAASKLKTG 486
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 269 PIGMSGARIVVHLCHALKKGEKGVASICNGGGGASSVMIE 150
P G+SG I+V LC A E +I G G +S+ IE
Sbjct: 229 PKGLSGKDIIVSLCGAFNHDEVLNHAIEFYGEGLNSLSIE 268
>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 627 FCKLFKINSFILFIFSKYYRSPSFLWNGYWY 719
F KLF+I+ +IL +FS Y F W W+
Sbjct: 73 FSKLFRISLYILGVFSLY----MFRWAIAWF 99
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 184 LQIEATPFSPFFKAWH-RCTTMRAPDIPIG*PKLTAPPCTLIFDGSNPNNF 333
L +E +P PF+K WH R T+ ++ P+ + +F G NP +F
Sbjct: 285 LPLELSPGCPFYKIWHIRNTSCQSWPSPL---YVKFNGGDKLFPGDNPYSF 332
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,202
Number of Sequences: 5004
Number of extensions: 62465
Number of successful extensions: 199
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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