Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19a07r
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    28   2.1  
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    27   2.7  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   3.6  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.7  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    27   4.7  
SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces ...    26   6.3  
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    26   6.3  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   6.3  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   8.3  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -1

Query: 731 IILVHGWRNVATSNFNALLVPAFLQAEDLNVIIADWSIGAAGN--YVVALLNVFKSAKAV 558
           IIL +    +    F   L   FL   DLN+II D    A GN  Y   + + +  AKAV
Sbjct: 111 IILKYNVIVITADLFYLFLARGFLSINDLNLIIFDECHHAIGNDAYARIMNDFYHRAKAV 170


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 377 FQSTDGIYTEVIHTNAGLRGFLPPLGDMDFYPNGGVE 267
           F+   G Y E+I T   ++ FLPP+G +  Y  G  E
Sbjct: 221 FEQMGGAYPELI-TRPDIKVFLPPIGGLTAYIFGPPE 256


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 324  EPSVSVYDLRVDSVGRLKPVRV 389
            EPS   Y L +D+ G LKPV V
Sbjct: 1030 EPSSHTYKLLMDAYGTLKPVNV 1051


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -2

Query: 499  SWGTVSADTRSASSGGIWVEKFHTSLLWTQHHQAGI*TLTGFSLPTESTRRSYT 338
            SW  +  D   A+   +  +KF+ ++        GI  L G  LPT+ST+RSYT
Sbjct: 1332 SWD-IGCDENPANFMIVDSDKFYLTIPDFPRQINGI--LEGKPLPTKSTKRSYT 1382


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -3

Query: 546 RMAEPDQRLQGLSVPPRGAQSRRTPGRHHREASGWKSSIHHFS 418
           R A   +R  G+S  PR   S  TPG     A  W +    FS
Sbjct: 178 RAAAISKRESGVSSEPRARTSSLTPGNTPNSAKQWSAFRSTFS 220


>SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 23/73 (31%), Positives = 32/73 (43%)
 Frame = -1

Query: 464 IIGRHLGGKVPYITSLDPASPGWNLNPNRFQSTDGIYTEVIHTNAGLRGFLPPLGDMDFY 285
           +IG   G  V Y+       PG  ++   F  T G  ++ +  N GLR     LGD D Y
Sbjct: 35  VIGIGSGSTVVYVVERLLTKPG--VDSVVFIPT-GFQSKQLIVNNGLR-----LGDPDCY 86

Query: 284 PNGGVEMPGCQDL 246
           PN  V   G  ++
Sbjct: 87  PNVDVSFDGADEV 99


>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 651 GFECHHRRLEHRGSRQLRSGPAECF*IGQSCGWFHRMAEPDQRLQGLSV 505
           G + H + +   G+ ++ S  A+CF +G  C        PD++L+   V
Sbjct: 139 GCDIHGKTVGVIGTGKIGSNVAKCFKMGFGCDVLAYDINPDKKLENYGV 187


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -1

Query: 890 LKVKDQKESDQYEPERDNAYHLFTRSNXKTSQPL---VLGSENVLKASNYDEKKR 735
           + +KDQK S Q+ PE + +  +      K ++ +    + ++N     N+   K+
Sbjct: 244 ISIKDQKTSKQFNPETNESVGILQNQESKRNEQIKQQYMPADNFGSNDNHSHNKK 298


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 462 DADLVSAETVPHEVVLRDL 518
           DAD + A   PHE  LRDL
Sbjct: 113 DADAIQASISPHECRLRDL 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,868,514
Number of Sequences: 5004
Number of extensions: 84932
Number of successful extensions: 223
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)