Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19a07r
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0053 - 12406958-12407011,12407012-12407168,12407280-124074... 31 1.6
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 29 5.0
09_04_0010 - 13686424-13686822 29 5.0
04_03_0857 + 20352331-20352582,20352740-20352951,20353047-203533... 29 5.0
03_02_0440 - 8500068-8501252 29 5.0
01_06_1212 + 35459675-35460073 29 5.0
07_03_0033 + 12656255-12656297,12657402-12657408,12657484-126580... 29 6.6
04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086... 29 6.6
01_06_1684 + 39151412-39151702,39152410-39152548,39152926-391530... 29 6.6
06_03_1267 - 28851286-28851306,28851452-28851520,28852031-288520... 28 8.7
04_03_0858 + 20357519-20357573,20358072-20358119,20360675-203609... 28 8.7
02_04_0086 + 19610899-19610992,19613399-19613652,19613744-196139... 28 8.7
01_05_0442 + 22233024-22233026,22233060-22233650,22233779-22234177 28 8.7
>10_07_0053 -
12406958-12407011,12407012-12407168,12407280-12407410,
12407592-12407727,12407953-12408224,12408604-12408893,
12408984-12409285,12409359-12409424,12409506-12409571,
12409855-12409926,12410013-12410084,12410207-12410281,
12410367-12410438,12410531-12410663,12411556-12411655
Length = 665
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -1
Query: 536 NRTSGSKVSQYHLVGHSLGGHQVGIIGRHLGGKVPYITSLDPASPGWNLNPNRFQ 372
N G + QY+L L ++ + G G VPY S P NLN N+ Q
Sbjct: 107 NNLGGGQNIQYNLPNKKL--ERLNLAGNQFAGNVPYSISTMPKLKYLNLNHNQLQ 159
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Frame = -1
Query: 263 PGCQDLSCSHHRCSFYFAESLKTGGFTARRCRNFVEAVNQQCNLPETAQMG-------GL 105
PG + ++Y + + GGFTAR + +LPE A+MG L
Sbjct: 23 PGFRFHPTDEELITYYLRQKIADGGFTARAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSL 82
Query: 104 RPKTGKTGIFHLR-TNAG 54
R + TG+ R TNAG
Sbjct: 83 RDRKYPTGVRTNRATNAG 100
>09_04_0010 - 13686424-13686822
Length = 132
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 552 FHRMAEPDQRLQGLSVPPRGAQSRRTPGRHHREASGWKSSIH 427
+HR+ +P + L PP Q RR+P HH E G +S ++
Sbjct: 54 YHRIYKPRSSGRCLLHPP--PQGRRSPHLHHPELLGTRSGLY 93
>04_03_0857 +
20352331-20352582,20352740-20352951,20353047-20353308,
20353418-20353726
Length = 344
Score = 29.1 bits (62), Expect = 5.0
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 2/144 (1%)
Frame = -1
Query: 821 TRSNXKTSQPLVLGSENVLKASNYDEKKRTIILVHGWRNVATSNFNALLVPAFLQAEDLN 642
TR+ K + L V K D+ K II VHG+ + ++AL + L A++L
Sbjct: 40 TRTQLKDGRHLAYLESGVPK----DQAKYKIIFVHGFDSC---RYDALPISPEL-AQELG 91
Query: 641 VIIADWSIGAAGNYVVALLNVFKSAKAVAGFIEWL--NRTSGSKVSQYHLVGHSLGGHQV 468
+ S G Y + N + K++A +E L N G K ++L+G S+GG +
Sbjct: 92 IY--QLSFDRPG-YAESDPNPASTEKSIALDVEELADNLQLGPK---FYLMGFSMGGEIM 145
Query: 467 GIIGRHLGGKVPYITSLDPASPGW 396
+H+ ++ + L P W
Sbjct: 146 WSCLKHISHRLAGVAILGPVGNYW 169
>03_02_0440 - 8500068-8501252
Length = 394
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 180 PEMPQLRRSRQPAVQLAGDRADGRLTAE 97
P +P L R AVQ+ DR DGRL +
Sbjct: 159 PPLPSLARRTVGAVQMTQDRRDGRLVVK 186
>01_06_1212 + 35459675-35460073
Length = 132
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 552 FHRMAEPDQRLQGLSVPPRGAQSRRTPGRHHREASGWKSSIH 427
+HR+ +P + L PP Q RR+P HH E G +S ++
Sbjct: 54 YHRIYKPRSSGRCLLHPP--PQGRRSPHLHHPELLGTRSGLY 93
>07_03_0033 +
12656255-12656297,12657402-12657408,12657484-12658016,
12658106-12658224,12658329-12658688,12659602-12659784
Length = 414
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -1
Query: 728 ILVHGWRNVATSNFNALLVPAFLQAEDL-NVIIADWSIGAAGNYVVALLNVFKSAKAVAG 552
I+ +GW + + FNAL + QA+ + +V+++D + V +NVF+S +
Sbjct: 5 IMTNGWTDKRGNRFNALKISKTAQAKRISSVVVSDEKF---WDNVELAINVFRSLVKLLR 61
Query: 551 FIE 543
F++
Sbjct: 62 FVD 64
>04_04_0326 -
24407201-24407374,24407397-24407460,24408266-24408689,
24408885-24409057,24409178-24409275,24409723-24409853,
24410053-24410174,24411091-24411245,24411976-24412081,
24412328-24412419,24412499-24412620,24413444-24413544,
24413636-24413849,24414173-24414311,24415228-24415584
Length = 823
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -1
Query: 572 SAKAVAGFIEWLNRTSGSKVSQYHL--VGHSLGGHQVGIIGRHLGGKVPYI 426
S+ GF+ L GS+ Y + VGHSLGG ++G L G+ P +
Sbjct: 472 SSSLTVGFLPALVG-EGSECHGYKIRVVGHSLGGSVATVLGMMLFGRYPNV 521
>01_06_1684 +
39151412-39151702,39152410-39152548,39152926-39153040,
39153232-39153332,39153688-39153809,39153885-39153976,
39155288-39155393,39155477-39155631,39155904-39156031,
39156349-39156479,39157171-39157268,39157371-39158162,
39158472-39158523
Length = 773
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -1
Query: 557 AGFIEWLNRTSGSKVSQYHL--VGHSLGGHQVGIIGRHLGGKVP 432
AGF+ L +G + Y++ VGHSLGG ++G L G+ P
Sbjct: 424 AGFLSSL-LGAGCECHGYNIEIVGHSLGGSVAALLGIRLYGRFP 466
>06_03_1267 -
28851286-28851306,28851452-28851520,28852031-28852066,
28852381-28852486,28852869-28852997,28853685-28853797,
28853907-28853993,28854106-28854543
Length = 332
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 669 GFPPGRGFECHHRRLEHRGSRQLRSGPAECF*IGQSCG--WFHRMAEPDQR 523
G PP ECHH + + + +R GP + +CG W +++ P R
Sbjct: 249 GRPPSAA-ECHHCGINAKATPMMRRGPDGPRTLCNACGLMWANKVKMPSSR 298
>04_03_0858 +
20357519-20357573,20358072-20358119,20360675-20360922,
20361152-20361363,20361480-20361741,20361832-20362143
Length = 378
Score = 28.3 bits (60), Expect = 8.7
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Frame = -1
Query: 749 DEKKRTIILVHGWRNVATSNFNALLVPAFLQAEDLNVIIADWSIGAAGNYVVALLNVFKS 570
++ K II VHG+ + ++AL + L A++L + S G Y + N+ +
Sbjct: 93 EQAKYKIIFVHGFDSC---RYDALPISPEL-AQELGIY--QLSFDRPG-YAESDPNLAST 145
Query: 569 AKAVAGFIEWL--NRTSGSKVSQYHLVGHSLGGHQVGIIGRHLGGKVPYITSLDPASPGW 396
K++A IE L N G K ++L+G S+GG + +H+ ++ + L P W
Sbjct: 146 EKSIALDIEELADNLQLGPK---FYLMGFSMGGEIMWSCLKHISHRLAGVAILAPVGNYW 202
>02_04_0086 +
19610899-19610992,19613399-19613652,19613744-19613955,
19614059-19614320,19614432-19614728
Length = 372
Score = 28.3 bits (60), Expect = 8.7
Identities = 32/136 (23%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Frame = -1
Query: 749 DEKKRTIILVHGWRNVATSNFNALLVPAFLQAEDLNVIIADWSIGAAGNYVVALLNVFKS 570
D+ K II VHG+ + ++AL V L AE+L V + + G + + ++
Sbjct: 92 DQAKHKIIFVHGFDSC---RYDALQVSPEL-AEELGVYMVSFDRPGYGE---SDPHPGRT 144
Query: 569 AKAVAGFIEWLNRTSGSKVS-QYHLVGHSLGGHQVGIIGRHLGGKVPYITSLDPASPGWN 393
++A IE L G ++ +++L+G+S+GG + +++ ++ ++ L P W
Sbjct: 145 EDSIAFDIEGL--ADGLQLGPKFYLIGYSMGGEIMWSCLKNIPHRLAGVSILGPVGNYWW 202
Query: 392 LNPNRFQSTDGIYTEV 345
ST+ Y ++
Sbjct: 203 SGYPSNVSTEAWYVQL 218
>01_05_0442 + 22233024-22233026,22233060-22233650,22233779-22234177
Length = 330
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 566 KAVAGFIEWLNRTSGSKVSQYHLVGHSLGGHQVGIIGRHLGGKVPYITSLDPAS 405
KAV G W+NR +GS + H++ ++ + L VP I +D AS
Sbjct: 151 KAVGGGGAWMNRAAGSSIKN-HVMSERRRWEKLNEMFLTLKSLVPSIDKVDKAS 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,910,305
Number of Sequences: 37544
Number of extensions: 677281
Number of successful extensions: 2037
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2035
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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