Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19a07r
(890 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81522-7|CAB04232.1| 297|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical p... 29 3.4
U80840-6|AAB37934.1| 317|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81531-8|CAB04322.2| 344|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr... 29 4.5
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein. 29 4.5
AC025726-18|AAK73910.1| 996|Caenorhabditis elegans Hypothetical... 29 4.5
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical... 29 4.5
Z79603-2|CAB01893.4| 500|Caenorhabditis elegans Hypothetical pr... 29 5.9
AF036703-3|AAB88556.2| 424|Caenorhabditis elegans Hypothetical ... 29 5.9
Z75953-1|CAB00098.1| 400|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z49071-2|CAA88874.1| 458|Caenorhabditis elegans Hypothetical pr... 28 7.8
U40947-5|AAC48070.1| 505|Caenorhabditis elegans Inward rectifyi... 28 7.8
AC006634-3|AAF39795.3| 535|Caenorhabditis elegans Hypothetical ... 28 7.8
>Z81522-7|CAB04232.1| 297|Caenorhabditis elegans Hypothetical
protein F32B4.6 protein.
Length = 297
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 569 AKAVAGFIEWLNRTSGSKVSQYHLVGHSLGGHQV 468
A + GFI+W+ + +G + +L GHS+GG V
Sbjct: 89 ADDLVGFIDWVRKITGE--DKVNLHGHSMGGKAV 120
>Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical
protein K07A1.11 protein.
Length = 412
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 429 VWNFSTQMPPDDADLVSAETVPHEVVLRDLGAAGPVQPF 545
VW+ S P + S+++VP EV+ G G V F
Sbjct: 335 VWDISKIQDPSSSSAASSDSVPPEVIFIHAGHTGKVADF 373
>U80840-6|AAB37934.1| 317|Caenorhabditis elegans Hypothetical
protein F08D12.11 protein.
Length = 317
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = -1
Query: 806 KTSQPLVLGSENVLKASNYDEKKRTIILVHGWRNVATSNFNALLVP-AFLQAEDLNVIIA 630
K++Q ++L +++ L D + R + ++ N + L +P + L A+DLN+ +
Sbjct: 186 KSTQRILLENQHFLMYRWADSEPRFTL-----NDLLAINCSQLFIPESTLTAKDLNIFLK 240
Query: 629 DWSIGAAGN 603
W IG GN
Sbjct: 241 HWIIGFIGN 249
>Z81531-8|CAB04322.2| 344|Caenorhabditis elegans Hypothetical
protein F36D3.9 protein.
Length = 344
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -1
Query: 584 NVFKSAKAVAGFIEWLNRTSGSKVSQYHLVGHSLGGHQVGIIGRHLGGKVPYITSLDPAS 405
+++ + VA FI + + H+ G S GGH V +IG PY +++
Sbjct: 255 DIYYNGPVVAAFIVYEDFEKYKSGIYRHIAGRSKGGHAVKLIGWGTERGTPYWLAVNSWG 314
Query: 404 PGW 396
W
Sbjct: 315 SQW 317
>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical protein
C14C10.5 protein.
Length = 1908
Score = 29.1 bits (62), Expect = 4.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 430 YGTFPPRCLPMMPTWC 477
Y +PP +PM+P WC
Sbjct: 1676 YDAYPPTFIPMLPLWC 1691
>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
Length = 2553
Score = 29.1 bits (62), Expect = 4.5
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = -1
Query: 806 KTSQPLVLGSENVLKASNYDEKKRTIILVHGWRNVATSNFNALLVPAFLQAEDLNVIIAD 627
+TSQ L+ NV++A N ++K LV +NVATS +L + AE + +
Sbjct: 677 ETSQHLI----NVMEAPNEGQQKFDERLVQSAKNVATSTAQLVLCAKTISAECDEPQVQE 732
Query: 626 WSIGAAGNYVVALLNVFKSAKAVAGFIE 543
I +A A + A+ VA I+
Sbjct: 733 RVIQSATKCAFATSQLVACARVVAPTID 760
>AC025726-18|AAK73910.1| 996|Caenorhabditis elegans Hypothetical
protein Y71G12B.11b protein.
Length = 996
Score = 29.1 bits (62), Expect = 4.5
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = -1
Query: 806 KTSQPLVLGSENVLKASNYDEKKRTIILVHGWRNVATSNFNALLVPAFLQAEDLNVIIAD 627
+TSQ L+ NV++A N ++K LV +NVATS +L + AE + +
Sbjct: 677 ETSQHLI----NVMEAPNEGQQKFDERLVQSAKNVATSTAQLVLCAKTISAECDEPQVQE 732
Query: 626 WSIGAAGNYVVALLNVFKSAKAVAGFIE 543
I +A A + A+ VA I+
Sbjct: 733 RVIQSATKCAFATSQLVACARVVAPTID 760
>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
protein Y71G12B.11a protein.
Length = 2553
Score = 29.1 bits (62), Expect = 4.5
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = -1
Query: 806 KTSQPLVLGSENVLKASNYDEKKRTIILVHGWRNVATSNFNALLVPAFLQAEDLNVIIAD 627
+TSQ L+ NV++A N ++K LV +NVATS +L + AE + +
Sbjct: 677 ETSQHLI----NVMEAPNEGQQKFDERLVQSAKNVATSTAQLVLCAKTISAECDEPQVQE 732
Query: 626 WSIGAAGNYVVALLNVFKSAKAVAGFIE 543
I +A A + A+ VA I+
Sbjct: 733 RVIQSATKCAFATSQLVACARVVAPTID 760
>Z79603-2|CAB01893.4| 500|Caenorhabditis elegans Hypothetical
protein M163.2 protein.
Length = 500
Score = 28.7 bits (61), Expect = 5.9
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +2
Query: 53 IRRLCANGRCQFCRFSAVSLPSARSPASCTAG*RLRRSCG-ISGR*IHPSSATRRS---- 217
IR + N R + V +P + P G R+ R G I P+ T ++
Sbjct: 172 IREVATNKRERVDEELDVIIPK-KQPRLSVNGKRIGRPPGSCKANYIPPTKITEQNDEDV 230
Query: 218 RSCIYDGCSLSLGNQASRLHRLD 286
R C++DGC+L+L ++A+ +D
Sbjct: 231 RQCLWDGCTLTLDDRATFFVHVD 253
>AF036703-3|AAB88556.2| 424|Caenorhabditis elegans Hypothetical
protein T11F8.2 protein.
Length = 424
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = -1
Query: 716 GWRNVATSNFNALLVP-----AFLQAEDLNVIIADWSIGAAGNYVVALLNVFKSAKAV 558
GW+NV S F+ LVP + A D ++ DW A Y+ A+L +K+ AV
Sbjct: 327 GWKNVCGSWFHMFLVPIGVLCVAMYAGDYTYVLKDWV--PALYYIPAILLNYKTYWAV 382
>Z75953-1|CAB00098.1| 400|Caenorhabditis elegans Hypothetical
protein F57F5.1 protein.
Length = 400
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 503 HLVGHSLGGHQVGIIGRHLGGKVPYITSLDPASPGWNLN 387
H G SLGGH V ++G + PY + + W N
Sbjct: 337 HTAGASLGGHAVKMLGWGVDNGTPYWLCANSWNEDWGEN 375
>Z49071-2|CAA88874.1| 458|Caenorhabditis elegans Hypothetical
protein T22C8.2 protein.
Length = 458
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 491 HSLGGHQVGIIGRHLGGKVPYITSLDPASP 402
H +GG Q I H GK+PY + + + P
Sbjct: 67 HFVGGKQFAIFYEHSFGKIPYFKAQNESDP 96
>U40947-5|AAC48070.1| 505|Caenorhabditis elegans Inward rectifying
k (potassium)channel family protein 1 protein.
Length = 505
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 245 SCSHHRCSFYFAESLKTGGFTARR 174
SC+H + F ES++T FTARR
Sbjct: 35 SCAHSISALSFLESIRTLAFTARR 58
>AC006634-3|AAF39795.3| 535|Caenorhabditis elegans Hypothetical
protein F35F11.1 protein.
Length = 535
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 549 ETSHSF--GRFKNIQQGHYVVAGCPDAP 626
+T SF F +I+QGH+ V PDAP
Sbjct: 308 QTEGSFIGSNFSSIKQGHHAVQKAPDAP 335
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,957,193
Number of Sequences: 27780
Number of extensions: 510105
Number of successful extensions: 1344
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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