Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19a07f
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 28 1.6
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 27 2.9
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.8
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 3.8
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 26 5.0
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 26 5.0
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 26 6.6
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 26 6.6
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 25 8.8
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar... 25 8.8
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 27.9 bits (59), Expect = 1.6
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 326 IILVHGWRNVATSNFNALLVPAFLQAEDLNVIIADWSIGAAGN--YVVALLNVFKSAKAV 499
IIL + + F L FL DLN+II D A GN Y + + + AKAV
Sbjct: 111 IILKYNVIVITADLFYLFLARGFLSINDLNLIIFDECHHAIGNDAYARIMNDFYHRAKAV 170
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 733 EPSVSVYDLRVDSVGRLKPVRV 668
EPS Y L +D+ G LKPV V
Sbjct: 1030 EPSSHTYKLLMDAYGTLKPVNV 1051
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +3
Query: 558 SWGTVSADTRSASSGGIWVEKFHTSLLWTQHHQAGI*TLTGFSLPTESTRRSYT 719
SW + D A+ + +KF+ ++ GI L G LPT+ST+RSYT
Sbjct: 1332 SWD-IGCDENPANFMIVDSDKFYLTIPDFPRQINGI--LEGKPLPTKSTKRSYT 1382
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +1
Query: 511 RMAEPDQRLQGLSVPPRGAQSRRTPGRHHREASGWKSSIHHFS 639
R A +R G+S PR S TPG A W + FS
Sbjct: 178 RAAAISKRESGVSSEPRARTSSLTPGNTPNSAKQWSAFRSTFS 220
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 406 GFECHHRRLEHRGSRQLRSGPAECF*IGQSCGWFHRMAEPDQRLQGLSV 552
G + H + + G+ ++ S A+CF +G C PD++L+ V
Sbjct: 139 GCDIHGKTVGVIGTGKIGSNVAKCFKMGFGCDVLAYDINPDKKLENYGV 187
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +2
Query: 167 LKVKDQKESDQYEPERDNAYHLFTRSNPKTSQPL---VLGSENVLKASNYDEKKR 322
+ +KDQK S Q+ PE + + + K ++ + + ++N N+ K+
Sbjct: 244 ISIKDQKTSKQFNPETNESVGILQNQESKRNEQIKQQYMPADNFGSNDNHSHNKK 298
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 595 DADLVSAETVPHEVVLRDL 539
DAD + A PHE LRDL
Sbjct: 113 DADAIQASISPHECRLRDL 131
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 216 SLSGSYWSDSFWSLTFSHRSSRWRPS 139
SLS S+ D+ WSL + S++ RP+
Sbjct: 516 SLSASHKRDAAWSLLYKATSNKSRPT 541
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 25.4 bits (53), Expect = 8.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 481 KNIQQGHYVVAGCPDAP 431
+NI + HY++ G PD P
Sbjct: 32 ENILEWHYIITGPPDTP 48
>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 545 SQYHLVGHSLGGHQVGIIGRHLGGKVPYIT 634
+Q L GHSLGG ++G G +P +T
Sbjct: 275 AQIWLTGHSLGGATAALMGLSFG--IPTVT 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,229,008
Number of Sequences: 5004
Number of extensions: 68917
Number of successful extensions: 186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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