Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV19a07f
(754 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80840-6|AAB37934.1| 317|Caenorhabditis elegans Hypothetical pr... 32 0.38
Z81522-7|CAB04232.1| 297|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical p... 29 2.7
Z81531-8|CAB04322.2| 344|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr... 29 3.5
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein. 29 3.5
AC025726-18|AAK73910.1| 996|Caenorhabditis elegans Hypothetical... 29 3.5
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical... 29 3.5
AF036703-3|AAB88556.2| 424|Caenorhabditis elegans Hypothetical ... 29 4.7
Z75953-1|CAB00098.1| 400|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z49071-2|CAA88874.1| 458|Caenorhabditis elegans Hypothetical pr... 28 6.2
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ... 28 6.2
AC006634-3|AAF39795.3| 535|Caenorhabditis elegans Hypothetical ... 28 6.2
L39927-1|AAA98784.1| 344|Caenorhabditis elegans cathepsin B-lik... 28 8.2
L39896-1|AAA98786.1| 344|Caenorhabditis elegans cathepsin B-lik... 28 8.2
AF016426-3|AAB65346.1| 344|Caenorhabditis elegans Cysteine prot... 28 8.2
AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical... 28 8.2
>U80840-6|AAB37934.1| 317|Caenorhabditis elegans Hypothetical
protein F08D12.11 protein.
Length = 317
Score = 32.3 bits (70), Expect = 0.38
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +2
Query: 248 PKTSQPLVLGSENVLKASNYDEKKRTIILVHGWRNVATSNFNALLVP-AFLQAEDLNVII 424
PK++Q ++L +++ L D + R + ++ N + L +P + L A+DLN+ +
Sbjct: 185 PKSTQRILLENQHFLMYRWADSEPRFTL-----NDLLAINCSQLFIPESTLTAKDLNIFL 239
Query: 425 ADWSIGAAGN 454
W IG GN
Sbjct: 240 KHWIIGFIGN 249
>Z81522-7|CAB04232.1| 297|Caenorhabditis elegans Hypothetical
protein F32B4.6 protein.
Length = 297
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 488 AKAVAGFIEWLNRTSGSKVSQYHLVGHSLGGHQV 589
A + GFI+W+ + +G + +L GHS+GG V
Sbjct: 89 ADDLVGFIDWVRKITGE--DKVNLHGHSMGGKAV 120
>Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical
protein K07A1.11 protein.
Length = 412
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 628 VWNFSTQMPPDDADLVSAETVPHEVVLRDLGAAGPVQPF 512
VW+ S P + S+++VP EV+ G G V F
Sbjct: 335 VWDISKIQDPSSSSAASSDSVPPEVIFIHAGHTGKVADF 373
>Z81531-8|CAB04322.2| 344|Caenorhabditis elegans Hypothetical
protein F36D3.9 protein.
Length = 344
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = +2
Query: 473 NVFKSAKAVAGFIEWLNRTSGSKVSQYHLVGHSLGGHQVGIIGRHLGGKVPYITSLDPAS 652
+++ + VA FI + + H+ G S GGH V +IG PY +++
Sbjct: 255 DIYYNGPVVAAFIVYEDFEKYKSGIYRHIAGRSKGGHAVKLIGWGTERGTPYWLAVNSWG 314
Query: 653 PGW 661
W
Sbjct: 315 SQW 317
>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical protein
C14C10.5 protein.
Length = 1908
Score = 29.1 bits (62), Expect = 3.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 627 YGTFPPRCLPMMPTWC 580
Y +PP +PM+P WC
Sbjct: 1676 YDAYPPTFIPMLPLWC 1691
>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
protein M110.4b protein.
Length = 1155
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = +2
Query: 113 PRYQHVQGP---DGLHLEDLWLKVKDQKESDQYEPERDNAYHLFTRSNPKTSQPLVLGSE 283
PR GP D +H + K++++K DQY+ +RD H R N + + V S
Sbjct: 750 PRKSTESGPKKIDEIHKDIRQEKIENEKARDQYDRDRDRR-HGGVRPNSNSLRKSVPVSR 808
Query: 284 NVL---KASNYDEKKR 322
N L + + E+KR
Sbjct: 809 NSLDRNRGMQHPEQKR 824
>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
protein M110.4a protein.
Length = 1156
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = +2
Query: 113 PRYQHVQGP---DGLHLEDLWLKVKDQKESDQYEPERDNAYHLFTRSNPKTSQPLVLGSE 283
PR GP D +H + K++++K DQY+ +RD H R N + + V S
Sbjct: 751 PRKSTESGPKKIDEIHKDIRQEKIENEKARDQYDRDRDRR-HGGVRPNSNSLRKSVPVSR 809
Query: 284 NVL---KASNYDEKKR 322
N L + + E+KR
Sbjct: 810 NSLDRNRGMQHPEQKR 825
>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
Length = 2553
Score = 29.1 bits (62), Expect = 3.5
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = +2
Query: 251 KTSQPLVLGSENVLKASNYDEKKRTIILVHGWRNVATSNFNALLVPAFLQAEDLNVIIAD 430
+TSQ L+ NV++A N ++K LV +NVATS +L + AE + +
Sbjct: 677 ETSQHLI----NVMEAPNEGQQKFDERLVQSAKNVATSTAQLVLCAKTISAECDEPQVQE 732
Query: 431 WSIGAAGNYVVALLNVFKSAKAVAGFIE 514
I +A A + A+ VA I+
Sbjct: 733 RVIQSATKCAFATSQLVACARVVAPTID 760
>AC025726-18|AAK73910.1| 996|Caenorhabditis elegans Hypothetical
protein Y71G12B.11b protein.
Length = 996
Score = 29.1 bits (62), Expect = 3.5
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = +2
Query: 251 KTSQPLVLGSENVLKASNYDEKKRTIILVHGWRNVATSNFNALLVPAFLQAEDLNVIIAD 430
+TSQ L+ NV++A N ++K LV +NVATS +L + AE + +
Sbjct: 677 ETSQHLI----NVMEAPNEGQQKFDERLVQSAKNVATSTAQLVLCAKTISAECDEPQVQE 732
Query: 431 WSIGAAGNYVVALLNVFKSAKAVAGFIE 514
I +A A + A+ VA I+
Sbjct: 733 RVIQSATKCAFATSQLVACARVVAPTID 760
>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
protein Y71G12B.11a protein.
Length = 2553
Score = 29.1 bits (62), Expect = 3.5
Identities = 26/88 (29%), Positives = 41/88 (46%)
Frame = +2
Query: 251 KTSQPLVLGSENVLKASNYDEKKRTIILVHGWRNVATSNFNALLVPAFLQAEDLNVIIAD 430
+TSQ L+ NV++A N ++K LV +NVATS +L + AE + +
Sbjct: 677 ETSQHLI----NVMEAPNEGQQKFDERLVQSAKNVATSTAQLVLCAKTISAECDEPQVQE 732
Query: 431 WSIGAAGNYVVALLNVFKSAKAVAGFIE 514
I +A A + A+ VA I+
Sbjct: 733 RVIQSATKCAFATSQLVACARVVAPTID 760
>AF036703-3|AAB88556.2| 424|Caenorhabditis elegans Hypothetical
protein T11F8.2 protein.
Length = 424
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +2
Query: 341 GWRNVATSNFNALLVP-----AFLQAEDLNVIIADWSIGAAGNYVVALLNVFKSAKAV 499
GW+NV S F+ LVP + A D ++ DW A Y+ A+L +K+ AV
Sbjct: 327 GWKNVCGSWFHMFLVPIGVLCVAMYAGDYTYVLKDWV--PALYYIPAILLNYKTYWAV 382
>Z75953-1|CAB00098.1| 400|Caenorhabditis elegans Hypothetical
protein F57F5.1 protein.
Length = 400
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 554 HLVGHSLGGHQVGIIGRHLGGKVPYITSLDPASPGWNLN 670
H G SLGGH V ++G + PY + + W N
Sbjct: 337 HTAGASLGGHAVKMLGWGVDNGTPYWLCANSWNEDWGEN 375
>Z49071-2|CAA88874.1| 458|Caenorhabditis elegans Hypothetical
protein T22C8.2 protein.
Length = 458
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 566 HSLGGHQVGIIGRHLGGKVPYITSLDPASP 655
H +GG Q I H GK+PY + + + P
Sbjct: 67 HFVGGKQFAIFYEHSFGKIPYFKAQNESDP 96
>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
protein R10F2.1 protein.
Length = 2779
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 218 NAYHLFTRSNPKTSQPLVLGSENVLKASNYDE 313
N YHL R PK +PL++ S + + + + E
Sbjct: 644 NEYHLTVREGPKPEEPLLVVSASDMDSGTFGE 675
>AC006634-3|AAF39795.3| 535|Caenorhabditis elegans Hypothetical
protein F35F11.1 protein.
Length = 535
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -1
Query: 508 ETSHSF--GRFKNIQQGHYVVAGCPDAP 431
+T SF F +I+QGH+ V PDAP
Sbjct: 308 QTEGSFIGSNFSSIKQGHHAVQKAPDAP 335
>L39927-1|AAA98784.1| 344|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 344
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 554 HLVGHSLGGHQVGIIGRHLGGKVPY 628
H G SLGGH V I+G + PY
Sbjct: 277 HTAGASLGGHAVKILGWGVDNGTPY 301
>L39896-1|AAA98786.1| 344|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 344
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 554 HLVGHSLGGHQVGIIGRHLGGKVPY 628
H G SLGGH V I+G + PY
Sbjct: 277 HTAGASLGGHAVKILGWGVDNGTPY 301
>AF016426-3|AAB65346.1| 344|Caenorhabditis elegans Cysteine
protease related protein 5 protein.
Length = 344
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 554 HLVGHSLGGHQVGIIGRHLGGKVPY 628
H G SLGGH V I+G + PY
Sbjct: 277 HTAGASLGGHAVKILGWGVDNGTPY 301
>AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical
protein Y73B6BL.33 protein.
Length = 610
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 520 EPDQRLQGLSVPPRGAQSRRTPGRHHREASGWKSSIHHFSGPS 648
EP +G +PPR A R P H R W S +GPS
Sbjct: 473 EPKYEPRG--IPPRSAPIRAPPAAHGRAPDTWGSYGAASTGPS 513
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,114,968
Number of Sequences: 27780
Number of extensions: 403400
Number of successful extensions: 1048
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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