Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19a06r
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   6.5  
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    26   8.6  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    26   8.6  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   8.6  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   8.6  

>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +1

Query: 700 SCLLPEVWFLFS 735
           SC+LP+VW LFS
Sbjct: 249 SCILPQVWSLFS 260


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
 Frame = +1

Query: 394 NGVQSRHISL-------FFVAHA*NSIYFSGDLFQIKSPQKCF 501
           NG++S+++S        +   H  ++ YF+G+ F    PQ CF
Sbjct: 133 NGIKSKYLSKETFLNLDYIDNHLASNEYFAGEQFTAADPQMCF 175


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 803 VLFIINNQIIYCRMNINLKFYFMENKNHTSGNKQLPKKFNFCYYN 669
           +L+ + +  I+   NI     FME K+H++  K+   K N   Y+
Sbjct: 152 LLYALISTCIFVSQNIFGSKIFMEAKSHSTHTKKHYNKLNLLLYS 196


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 695  LVVVCYQKYGFYFP*NKISSLCSFCNRLFDYL 790
            L V C+ ++ +YF     S   S+ N +FDY+
Sbjct: 1116 LPVCCFLRFMYYFLPTVFSLSGSYWNSIFDYI 1147


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 579  SQAQPSWCLVSVNYFKHSS 523
            ++  PS+CLV +N++ H S
Sbjct: 952  TEGDPSYCLVLLNFYNHFS 970


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,601,257
Number of Sequences: 5004
Number of extensions: 73870
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)