Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19a06f
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    38   0.002
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    29   0.76 
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   3.0  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    26   5.3  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   5.3  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   5.3  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    26   5.3  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    25   9.3  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    25   9.3  

>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 19/59 (32%), Positives = 34/59 (57%)
 Frame = +2

Query: 605 DAKIPFTYEVNWKKSNINFEDRFDKYLDPNFFQHRIHWFSIFNSFMMVIFLVGLXSMIL 781
           D  +  +Y V+WK S+  +  R+DKY+  +    +I W  I +S ++  FL+ + S+IL
Sbjct: 231 DLTLVTSYSVSWKYSDTPWATRWDKYM--HIESRQIRWIFIIHSAIIDTFLIFVVSIIL 287


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +2

Query: 296 SEALQGVELEFSGLDITFKENVPAQQFCAIELNDQTYKAFVYAVKNHYWYQMYIDDLPIW 475
           S A  GV   F+G+ I F+  VP   + +IE+       F+Y  K+ Y+ ++     P  
Sbjct: 495 SPAKDGVVTFFTGV-ILFQNLVPISLYISIEIVKTIQAIFIYFDKDMYYKKLKYACTPKS 553

Query: 476 GTVGEIDGDHFYIWTHK 526
             + +  G   YI++ K
Sbjct: 554 WNISDDLGQVEYIFSDK 570


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 566 LQQSCFHYTQCQISCESRCKNGLHQSHLQCPILADRLYTFDTNN 435
           LQ    HY    +SC       L  + LQ  +LAD+ Y  + +N
Sbjct: 12  LQVCSTHYAMTIVSCGFHSPQSLMNADLQHCLLADQNYLLNNSN 55


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 499 SINLTYSAPYWQIVYIHLIPIMVFDSINESFVSLIVEFDGT 377
           S+ LTY  PY + +Y +    + F   NE F   +   DG+
Sbjct: 261 SVYLTYDVPYGRSLYYYTSCALEFRFTNEFFPMDVTPNDGS 301


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +3

Query: 300 KLYKASNWSSAVLILRLRKMCRRSNFVPSNSTIKLTK 410
           +L   S+W+  + ++ L + C+RS +  S+  ++ TK
Sbjct: 56  QLVGGSSWTGKIPVVLLNEHCQRSKWEKSDVKVRQTK 92


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 638 WKKSNINFEDRFDKYLDPNFFQHRIH 715
           W+K N+N ED F     P F   R+H
Sbjct: 69  WQKENLNKEDSFVLLDGPPFANGRLH 94


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 641 KKSNINFEDRFDKYLDPNFFQHRI 712
           KKS+ N + +  K LDP  FQH+I
Sbjct: 85  KKSSQNKQAKESKLLDPIAFQHKI 108


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
 Frame = +2

Query: 41  FILIVN*TVVATLLRVKMKFLYILFIMWTIVHCDEHTHSYKDGEQVVLWMNTV------G 202
           F+L      +A  L+  ++F Y     W   H    THS      V  + N++      G
Sbjct: 167 FLLAYPNAYIAAALQTVVQFSYTTVFGWYTTHLFLSTHSLFPSFLVHAFCNSMGLPTLYG 226

Query: 203 PYHNRQETYAYFSL 244
              NR +T  Y++L
Sbjct: 227 KIGNRNQTRIYYTL 240


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 556 PVSIIPNVKFLVSPDVKMVSINLTYSAPYWQIVYIHLIPIMVF 428
           P   I  ++FL +PD +     L Y+     I+Y+   P  VF
Sbjct: 539 PAGTIAIIEFLNAPDCRQAFSKLAYTRIKSSILYLEKAPRDVF 581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,350,015
Number of Sequences: 5004
Number of extensions: 76008
Number of successful extensions: 210
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)