Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19a06f
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024775-3|AAK68454.1|  580|Caenorhabditis elegans Hypothetical ...   309   1e-84
AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily a...    55   5e-08
Z79759-8|CAE45097.1|  619|Caenorhabditis elegans Hypothetical pr...    44   2e-04
Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AF024501-2|AAB70367.2|  334|Caenorhabditis elegans Serpentine re...    29   3.8  
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe...    29   5.0  
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe...    29   5.0  
U41009-10|AAA82284.2|  313|Caenorhabditis elegans Serpentine rec...    29   5.0  
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty...    29   5.0  
Z81513-10|CAB04183.1|  247|Caenorhabditis elegans Hypothetical p...    28   8.7  
AF304119-1|AAG50232.1|  326|Caenorhabditis elegans seven transme...    28   8.7  
AF068718-6|AAC17769.2|  326|Caenorhabditis elegans Hypothetical ...    28   8.7  
AF047658-2|ABC71829.1|  170|Caenorhabditis elegans Hypothetical ...    28   8.7  

>AC024775-3|AAK68454.1|  580|Caenorhabditis elegans Hypothetical
           protein Y41D4A.4 protein.
          Length = 580

 Score =  309 bits (759), Expect = 1e-84
 Identities = 137/230 (59%), Positives = 169/230 (73%), Gaps = 4/230 (1%)
 Frame = +2

Query: 107 ILFIMWTIVHCDEHTHSYKDGEQVVLWMNTVGPYHNRQETYAYFSLPFCVGTKVTIGHYH 286
           +L     +V  DEH H Y+  E+VVLWMNTVGPY NRQETY YFSLPFC G K  IGHYH
Sbjct: 7   LLLFTSLLVEADEHDHLYEVDEEVVLWMNTVGPYSNRQETYTYFSLPFCKGEKKEIGHYH 66

Query: 287 ETLSEALQGVELEFSGLDITFKENVPAQQFCAIELNDQTYKAFVYAVKNHYWYQMYIDDL 466
           ET+ E+L GVELEFSGLDI F+ N      C  +L +  YK  +YA++N Y+YQMY+DD+
Sbjct: 67  ETMGESLLGVELEFSGLDIKFRTNTKKTVVCEKKLTETDYKTLLYAIQNSYYYQMYLDDM 126

Query: 467 PIWGTVGEIDG----DHFYIWTHKKFDIGYNGNRIVEVNLTAENKERLSPDAKIPFTYEV 634
           PIWG VGEID       + ++THK+ DIGYN  ++V+VNLT + +  + P A++ FTYEV
Sbjct: 127 PIWGMVGEIDNTVNPPAYKLYTHKRLDIGYNDKQVVDVNLTTDGRVDIRPGAELTFTYEV 186

Query: 635 NWKKSNINFEDRFDKYLDPNFFQHRIHWFSIFNSFMMVIFLVGLXSMILM 784
            W KS ++F  RFDKYLDP+FFQHRIHWFSIFNSFMMV+FLVGL  MIL+
Sbjct: 187 QWSKSEVDFTKRFDKYLDPSFFQHRIHWFSIFNSFMMVVFLVGLVWMILV 236


>AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 123 protein.
          Length = 655

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 24/62 (38%), Positives = 39/62 (62%)
 Frame = +2

Query: 599 SPDAKIPFTYEVNWKKSNINFEDRFDKYLDPNFFQHRIHWFSIFNSFMMVIFLVGLXSMI 778
           S  A+I ++Y + W K++I +  R+D Y+  +     I WFSI NS ++V+FL G+  MI
Sbjct: 255 SESAEITYSYSIKWTKTDIKWSSRWD-YILQSMPHTNIQWFSIMNSLVIVLFLTGMVGMI 313

Query: 779 LM 784
           +M
Sbjct: 314 IM 315


>Z79759-8|CAE45097.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK858.6 protein.
          Length = 619

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
 Frame = +2

Query: 227 YAYFSLPFCVGTKVTIGHYHETLSEALQGVELEFSGLDITFKENVPAQQFCAIELNDQTY 406
           + Y+S+PFC      I +  E L E ++G  +  +      K+N      C+ +L+ +  
Sbjct: 54  FEYYSVPFCKPANGDIQYKSENLGEVMRGDRIVNTPYAFHMKKNEQCVSVCSNKLSKENV 113

Query: 407 KAFVYAVKNHYWYQMYIDDLPIWGTVGEI-DGDHFYIWTHKKFDIGYN 547
             F   ++  Y   + +D+LP+   +     GD +Y   ++   IG N
Sbjct: 114 ALFKERIRQEYSAHLIVDNLPVATVINPAQSGDVYYDLGYRLGWIGDN 161



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 36/60 (60%)
 Frame = +2

Query: 605 DAKIPFTYEVNWKKSNINFEDRFDKYLDPNFFQHRIHWFSIFNSFMMVIFLVGLXSMILM 784
           +  + F+Y V +++S++ +  R+D YL        IHWFSI NS ++V+ L G  S+ ++
Sbjct: 222 EQSVDFSYSVAFEESDVPWASRWDVYLTTKAVD--IHWFSILNSIVVVLSLSGFVSVTIV 279


>Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical
           protein C31E10.8 protein.
          Length = 1272

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +2

Query: 290 TLSEALQGVELEFSGLDITFKENVPAQQFCAIELNDQTYKAFVYAVKNHYWYQMYIDD 463
           TL   LQG+ ++  G  I+FKE   A  + A +LN         A ++ Y ++ ++++
Sbjct: 301 TLQSLLQGIYVDSFGFRISFKEEPNALHYMATKLNHFYANRSKSASEHKYNWKRFLEE 358


>AF024501-2|AAB70367.2|  334|Caenorhabditis elegans Serpentine
           receptor, class i protein63 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 493 NLTYSAPYWQIVYIHLIPIMVFDSINESFVSLIVEFDGTKLLRRHIFL 350
           ++ +S P+W I Y H+I   V   I +SF   ++ F  +K+     FL
Sbjct: 3   DIDFSTPHWLITYYHVIG--VISLIFDSFSIYLILFKSSKIDNFRYFL 48


>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defective
            protein 19,isoform a protein.
          Length = 1783

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 677  KYLDPNFFQHRIHWFSIFNSFMMVIFLV 760
            +Y+  N  Q+R+ WF    +F  VIFL+
Sbjct: 1099 RYIPRNRLQYRVWWFVTSRAFEYVIFLI 1126


>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defective
            protein 19,isoform b protein.
          Length = 1877

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 677  KYLDPNFFQHRIHWFSIFNSFMMVIFLV 760
            +Y+  N  Q+R+ WF    +F  VIFL+
Sbjct: 1099 RYIPRNRLQYRVWWFVTSRAFEYVIFLI 1126


>U41009-10|AAA82284.2|  313|Caenorhabditis elegans Serpentine
           receptor, class v protein17 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = -3

Query: 586 VFCCKVDFNNPVSIIPNVKFLVSPDVKMVSINLTYSAPYWQIVYIHLIPIMVFDSINESF 407
           VF   V  +N ++++   ++L      +     T     W+I YI+  P+ +F+SI  S 
Sbjct: 90  VFWFLVVRSNGIALMTTQRYLTITQPTLPLTRFTQLLKPWKIAYIYWGPVAIFNSIFLS- 148

Query: 406 VSLIVEFD 383
            SL + FD
Sbjct: 149 -SLEIGFD 155


>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
            calcium channelalpha 1 subunit protein.
          Length = 1783

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 677  KYLDPNFFQHRIHWFSIFNSFMMVIFLV 760
            +Y+  N  Q+R+ WF    +F  VIFL+
Sbjct: 1099 RYIPRNRLQYRVWWFVTSRAFEYVIFLI 1126


>Z81513-10|CAB04183.1|  247|Caenorhabditis elegans Hypothetical
           protein F26D2.13 protein.
          Length = 247

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 225 VSCRLWYGPTVFIQSTT 175
           VSCR WYG T+ I  T+
Sbjct: 53  VSCRRWYGTTIVIAGTS 69


>AF304119-1|AAG50232.1|  326|Caenorhabditis elegans seven
           transmembrane protein protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 664 FKIYVALLPVNFICKWD-LCIRTKPFFVFCCKVDFNNPVS 548
           F +   + P++   +W  LCI   PF  +   + F+NP +
Sbjct: 282 FGVIAIIAPLDIPYRWSFLCIVPVPFIFYMATIPFSNPTT 321


>AF068718-6|AAC17769.2|  326|Caenorhabditis elegans Hypothetical
           protein R01B10.5 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 664 FKIYVALLPVNFICKWD-LCIRTKPFFVFCCKVDFNNPVS 548
           F +   + P++   +W  LCI   PF  +   + F+NP +
Sbjct: 282 FGVIAIIAPLDIPYRWSFLCIVPVPFIFYMATIPFSNPTT 321


>AF047658-2|ABC71829.1|  170|Caenorhabditis elegans Hypothetical
           protein K03H6.7 protein.
          Length = 170

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 10  STRRFGNTCYVYFNSELNCCCYIAACKNE 96
           S R+FGN+CY++ N  ++      +C+ +
Sbjct: 23  SDRQFGNSCYIFVNQRMDFDSAENSCRRQ 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,257,862
Number of Sequences: 27780
Number of extensions: 417898
Number of successful extensions: 1371
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)