Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19a03r
         (458 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0167 + 5221910-5222516,5222826-5224642                           28   4.2  
06_01_0220 - 1673657-1675765                                           28   4.2  
07_03_0170 + 14679746-14679936,14680111-14680208,14680460-146806...    27   5.5  
12_01_0234 + 1755704-1756120,1756203-1756313,1756923-1757063,175...    27   9.6  
06_02_0208 - 13026296-13026654,13027394-13027497,13028109-130282...    27   9.6  
03_02_0014 + 4955759-4956106,4956229-4956277,4956372-4956579,495...    27   9.6  

>09_02_0167 + 5221910-5222516,5222826-5224642
          Length = 807

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
 Frame = +1

Query: 46  LGFRISLPVSSQDMLKSLSMERVRAVMMLGATTFLCTPIMNSKTNNVEVTAKKG*FHKDC 225
           LG ++   + SQ   KSL  E   +VM L A+ F    +M +  N+V + + +   ++  
Sbjct: 17  LGGQVLNEIRSQFGKKSLIFEVENSVMEL-ASEFR---VMQAFINHVGMCSHQNAAYEAW 72

Query: 226 VSETTGV---RGSINQWYAAIAVQTDT---IVSRILHLIVAGWRHAITSVKR 363
           + E   V      I + YA +  QT     ++  +LH  +  W H  T +K+
Sbjct: 73  LDEVKSVGFDAEDIIEEYAYLIAQTSNEGGLIKSVLHRSINAWCHIATQLKQ 124


>06_01_0220 - 1673657-1675765
          Length = 702

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 381 FESF*ASFN*SDSMSPTSYNEMENSTDNCVSLYSNSSIPLVDGSSDTCSL 232
           FE+F AS      + P +   ++  TD+C + Y N     V G  DTC+L
Sbjct: 404 FEAFSASA--PGRIDPATGYLLDELTDDCHADYRNLMAAAVRGDFDTCAL 451


>07_03_0170 +
           14679746-14679936,14680111-14680208,14680460-14680605,
           14680933-14680977
          Length = 159

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 212 NHPFFAVTSTLLVLLFMIGV 153
           NHP  A T+T+L+LL ++GV
Sbjct: 2   NHPSSAATATVLLLLALLGV 21


>12_01_0234 +
           1755704-1756120,1756203-1756313,1756923-1757063,
           1757142-1757312,1757412-1757616,1757738-1757910,
           1758021-1758103,1758250-1758389,1758569-1758645,
           1758711-1758810,1759978-1760606
          Length = 748

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 282 CTN*HNCQ*NSPSHCSWLETCYH 350
           CT+ H C    PS      TCYH
Sbjct: 556 CTHTHTCNPPGPSATEHTHTCYH 578


>06_02_0208 -
           13026296-13026654,13027394-13027497,13028109-13028200,
           13028418-13028774,13029932-13030109,13030454-13030507,
           13030701-13030784,13031521-13031714
          Length = 473

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 43  GLGFRISLPVSSQDM-LKSLSMERVRAVMMLGATTFLCTPIMNSKTNNVE 189
           G  +RIS PV+  D     L+ ++ +AV + G   +L T I   K N  E
Sbjct: 414 GTDYRISFPVALHDQDTSELNAQQEKAV-LTGFRDYLRTVITRGKINGTE 462


>03_02_0014 +
           4955759-4956106,4956229-4956277,4956372-4956579,
           4956700-4956874,4956981-4957046,4957150-4957263,
           4957366-4957482,4957589-4957715,4957826-4958112,
           4958209-4958399,4958937-4959022,4959117-4959193,
           4959330-4959473
          Length = 662

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +1

Query: 265 WYAAIAVQTDTIVSRILHLIVAGWRHAITSVKRRSKAFKSSQA 393
           W AAIA  T  I+S +   I    +H +  VK   K      A
Sbjct: 291 WVAAIAPLTSVIISTLFVYITRADKHGVVIVKYIKKGINPPSA 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,564,284
Number of Sequences: 37544
Number of extensions: 191429
Number of successful extensions: 520
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)