Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19a01r
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    26   3.7  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   8.5  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   8.5  

>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
 Frame = +3

Query: 81  LQNVFSNLLYPFYNTQNNYQVSKLLSIFEIMQYKSMTRLHNNSK--XDNTEETHNTDLT- 251
           +++ +++L Y F   +   ++ K L +    + KSM  ++NN      + E  HN DL+ 
Sbjct: 437 IEDKYTHLRYYFSLQRRLVRLRKCLKVSNTTELKSMKLINNNPSRLFLHGERIHNGDLSN 496

Query: 252 ---WKKDLNTVL 278
              W+   N  +
Sbjct: 497 RTVWRSKTNNAI 508


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 46  LPECLL*TLALIYKMYFLIYYIPFTIHKIIIRFLN 150
           LP+CL       Y MYFL+  +   I  + I +L+
Sbjct: 105 LPKCLYEQFRYFYNMYFLLVSLSQLIPPLKIGYLS 139


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 135 YQVSKLLSIFEIMQYKSMTRLHN 203
           Y+ +  L IFE MQY S   LHN
Sbjct: 717 YKKANELYIFEDMQYMSDIELHN 739


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,040
Number of Sequences: 5004
Number of extensions: 36651
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)