Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19a01r
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   7.0  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   7.0  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 96  SNLLYPFYNTQNNYQVSKLLSIFEIMQY 179
           +N L PF      Y+   +L  ++IM+Y
Sbjct: 76  ANTLIPFMQQNYPYEWQLILRRYKIMKY 103


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 81  LQNVFSNLLYPFYNTQNNYQVSKLLSIFEIMQYKS 185
           + ++ +N  Y  YN  NNY  +   +  + + YK+
Sbjct: 315 ISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKN 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,021
Number of Sequences: 438
Number of extensions: 2630
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)