Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV19a01f
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    62   1e-10
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    31   0.23 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.23 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    29   0.94 
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    27   3.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   3.8  
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    26   6.6  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    25   8.8  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   8.8  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   8.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.8  

>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 5/147 (3%)
 Frame = +1

Query: 316 PF-RQEFDESNEWSGKPIPGWLYRP--LCPGGVLLALHDRAPQLRVAEDRLAVTGDRGYC 486
           PF R+ F  S   + K +P  +YR   L P    +  HD +  + +    L  T ++G+ 
Sbjct: 318 PFNRRGFRYSPCEAAKDLPNVMYREIELPPFTSRINWHDISTPVFIDHSALCATVEKGFR 377

Query: 487 TVRATHGVSRGSWYWEACVEEL--PEXXXXXXXXXXXXXNLQAPLGYDKFGYSWRSRKGT 660
             R+   ++ G WY+E  +E+    +              L AP+GYD + Y  R   G 
Sbjct: 378 MARSNVFMTSGEWYFEIKIEKGGGDDGAHVRIGVSRREAPLDAPVGYDAYSYGLRDLGGQ 437

Query: 661 RFHESRGKHYSGAYGEGDTLGFLIVLP 741
           + H SR +++  ++G GD +G  I LP
Sbjct: 438 KVHMSRPRNFMDSFGTGDIIGLHISLP 464


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 271 KDGYRYILAEPDPHAPFRQEFDESNEWSGKPIPGWLYRPLC 393
           +D YRY   E +  A FR++F +SNE    P PG +Y   C
Sbjct: 650 RDDYRYS-PEIEFKAAFREKFLQSNEKVPFPRPGEIYEKRC 689


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 203 PFLPMGAPVSAALPTAGLRLPCLPFTLPAS 114
           P LPMGAP +  LP +    P LP  +PA+
Sbjct: 437 PSLPMGAPAAPPLPPSAPIAPPLPAGMPAA 466



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 218 TSALRPFLPMGAPVSAALPTAGLRLPCLPFTLPASGTAIIS 96
           ++ + P LP G P +  LP A    P  P   PA+  A I+
Sbjct: 452 SAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIA 492



 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 146 SAGLRSAARPRPGLPSARKAVTPMSPL*NCPRTATPP 256
           S  + +   P P +P       P  PL N  RT+TPP
Sbjct: 382 SRAVSNPPAPPPAIPGRSAPALP--PLGNASRTSTPP 416


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 146 SAGLRSAARPRPGLPSARKAVTPMSPL*NCPRTATPPSIPS 268
           S+G R    P+   P++R+ V P +       T+ PPS+PS
Sbjct: 544 SSGTRRLGLPQRATPASRERVLPYTRSQAFHSTSLPPSLPS 584


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 349 WSGKPIPGWLYR 384
           W GKPIP WL++
Sbjct: 378 WDGKPIPFWLWK 389


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 215  SALRPFLPMGAPVSAALP-TAGLRLPCLPFTLPASGTAIISS 93
            SA RP +P   PVS ALP ++ +  P +  +   S TA  +S
Sbjct: 1065 SATRPQIPQPPPVSTALPSSSAVSRPPIATSAGRSSTAASTS 1106


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 199 KGRNADVTALKLPSHGYPTEHPFNKDGYRYILAE 300
           KGRN +   +   + G P +HP  +  Y  I A+
Sbjct: 211 KGRNEECMKILTRNAGLPADHPIMQKEYNAIQAD 244


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 94  QGAVIFNV*SILKNPCEPFVVCYSSTRTTH 5
           +G +  ++ SI  +P EPF+ C S   T H
Sbjct: 208 RGYIPASIVSISFHPVEPFLACASENGTIH 237


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 155  GLRLPCLPFTLPASGTAIISSRCSNFQRII 66
            GL++ CLPF   ++  A+I+S  +  ++ +
Sbjct: 970  GLKIYCLPFFSSSNNLAVITSSLAKIEQTV 999


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +1

Query: 358 KPIPG-WLYRPLCPGGVLL 411
           K +PG W++R L PGG+ L
Sbjct: 368 KGLPGSWIFRKLTPGGIPL 386


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +2

Query: 158  RSAARPRPGLPSARKAVTPMSPL*NCPRTAT----PPSIPSTKTVT 283
            R A+ PRP  P +     P+S + + P +      PPS P +K V+
Sbjct: 956  RKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVS 1001


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.136    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,558
Number of Sequences: 5004
Number of extensions: 44062
Number of successful extensions: 128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)