Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18p20r
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   4.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   4.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   8.6  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 341 CPTLQTETHCCFTSEIG 391
           C T  ++T CCF  + G
Sbjct: 437 CKTCNSKTKCCFAQDDG 453


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 597 HIARFHTLV*LISHTCAHCVNCVVMKLIYIILFGP 701
           H  +  TL   IS +    + C+    IYIILF P
Sbjct: 733 HETQITTLCVAISLSATVTLVCLYSPKIYIILFQP 767


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 597 HIARFHTLV*LISHTCAHCVNCVVMKLIYIILFGP 701
           H  +  TL   IS +    + C+    IYIILF P
Sbjct: 823 HETQITTLCVAISLSATVTLVCLYSPKIYIILFQP 857


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 63  NDCCN*YVYLISLISY*VYIY 1
           N+C N Y Y+  L  Y + +Y
Sbjct: 182 NNCDNTYAYISDLSGYALVVY 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,871
Number of Sequences: 438
Number of extensions: 5609
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)