Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18p20f
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    29   0.84 
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.4  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    27   3.4  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    26   5.9  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    26   5.9  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    26   5.9  

>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -3

Query: 496 TGSPLDSSVPRGASQSLELTTPQHSKSP*TSS---QSLVISNEAGPYSSMVDNS 344
           + +P+ +SVP  +S     T P  S  P TSS    S ++SN   P SS +  S
Sbjct: 95  SSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISAS 148


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 333 VQKQLLSTMELYGPASLEITKLWDEVQGDFE 425
           + K+L   +E Y P   EI   +  ++G+FE
Sbjct: 66  LDKELQGIVEFYAPKEKEIADQYGRIKGEFE 96


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 138 TSPIETHGNYYRQLAPSLRQPIL*FRLSRTKNSLS 34
           +SPI    + ++Q   SL+ P L  R S T NSL+
Sbjct: 390 SSPINRLSSSFKQYTSSLKSPGLSTRTSSTMNSLN 424


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 120 HGNYYRQLAPSLRQPIL*FRLSRTKNSLSPMCISP 16
           +GNYY Q  PS   P + FR       +SP  +SP
Sbjct: 383 NGNYYLQQLPSASPPTM-FRDHSFAPLVSPSIVSP 416


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 168 SLYKRREERKTSPIETHGNYYRQLAPSLRQPIL*FR-LSRTKNSLSPMCISP 16
           S +KR     +    ++GN+ R   PS+ +  + F   S + NS   +C+SP
Sbjct: 172 SSFKRHRSSNSYSSSSNGNHVR-FQPSIAEEEISFNSFSNSLNSEEDVCVSP 222


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = -3

Query: 508 LQQLTGSPLDSSVPRGASQSLELTTPQHSKSP*TSSQSLVISNEA----GPYSSMVDNSC 341
           L  +T +PL+ +    A+Q+  +TT  H     + + SL  +N A     PYSS    + 
Sbjct: 270 LLPVTKTPLEEANSSPAAQNQHITTVDHVHPQVSMTPSLSTNNTATSVPAPYSSAASVNV 329

Query: 340 F*TKATVLL 314
               AT +L
Sbjct: 330 VPGHATTIL 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,718
Number of Sequences: 5004
Number of extensions: 62998
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)