Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18p20f
(696 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 98 5e-21
Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical pr... 61 6e-10
Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical pr... 45 6e-05
Z81086-1|CAB03120.2| 258|Caenorhabditis elegans Hypothetical pr... 44 8e-05
Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical pr... 44 1e-04
U50191-5|AAK31552.1| 247|Caenorhabditis elegans Tetraspanin fam... 38 0.005
AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin f... 36 0.021
AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin f... 36 0.021
U42832-3|AAA83573.2| 361|Caenorhabditis elegans Tetraspanin fam... 35 0.064
U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin fam... 33 0.26
AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical ... 32 0.34
U53332-2|AAK31532.1| 473|Caenorhabditis elegans Tetraspanin fam... 32 0.45
Z92824-4|CAB07307.2| 395|Caenorhabditis elegans B0413.2 protein. 31 0.79
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 31 0.79
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 31 0.79
U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z68221-3|CAA92495.1| 1249|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z68221-2|CAD59229.1| 1228|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z68221-1|CAB61039.2| 1252|Caenorhabditis elegans Hypothetical pr... 29 2.4
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 29 2.4
AY438645-1|AAR00672.1| 1249|Caenorhabditis elegans membrane Calc... 29 2.4
AY438644-1|AAR00671.1| 1252|Caenorhabditis elegans membrane Calc... 29 2.4
AJ223616-1|CAA11491.1| 1228|Caenorhabditis elegans calcium ATPas... 29 2.4
DQ178635-1|ABD75714.1| 361|Caenorhabditis elegans tetraspanin f... 29 3.2
AL032626-14|CAA21534.1| 163|Caenorhabditis elegans Hypothetical... 29 4.2
AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk (m... 28 5.5
Z46812-2|CAA86844.1| 1027|Caenorhabditis elegans Hypothetical pr... 27 9.7
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 27 9.7
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 27 9.7
AL021493-2|CAA16393.1| 382|Caenorhabditis elegans Hypothetical ... 27 9.7
AF068711-2|AAC17776.1| 414|Caenorhabditis elegans Hypothetical ... 27 9.7
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 27 9.7
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 27 9.7
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 98.3 bits (234), Expect = 5e-21
Identities = 64/227 (28%), Positives = 101/227 (44%), Gaps = 2/227 (0%)
Frame = +3
Query: 12 TTVKYTLVTVNFLFLITGIIILAVGGSVQAAYNNYHEFLSERFFSLPAFCIATXXXXXXX 191
T VKY L N + + G+ ++ VG +Q ++N + L + + P +
Sbjct: 7 TIVKYLLFLANLVLWVGGLSLIIVGSILQLKFDNVLDILGDERLATPILLLVIGSLCTLL 66
Query: 192 XXXXXYGAFMENYLMNMAFAGAMILMFVFQLSACIAGYALKSNTVALVQKQLLSTMELYG 371
GA ENY + ++FA + L+ +++A I GYAL + + QL + M Y
Sbjct: 67 GFLGCCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQTGMVRY- 125
Query: 372 PASLEITKLWDEVQGDFECCGVVNSSDWLAPLGTLESRGLPVSCCSHIYGTIQLFNCTTV 551
S + WD+ FECCGV NSSDWL T + +P SCC ++ C
Sbjct: 126 HESRGVESAWDKTHQLFECCGVTNSSDWL----TFTT--IPDSCCIE-----EIEGCARE 174
Query: 552 EA--YPTGCAEAFGNWVQSHAAAIGAAGIFLVLMQALAVAGAVWMAK 686
A + GC + WV + A +G L +Q + V A ++K
Sbjct: 175 NAPLFEPGCIHSVEQWVLKNGAMVGGICAVLAAIQLVGVCFACCLSK 221
>Z78415-6|CAH60758.1| 291|Caenorhabditis elegans Hypothetical
protein C17G1.8 protein.
Length = 291
Score = 61.3 bits (142), Expect = 6e-10
Identities = 49/216 (22%), Positives = 86/216 (39%), Gaps = 14/216 (6%)
Frame = +3
Query: 51 FLITGIIILAVGGSVQAAYNNYHEFLSERFFSLPA--FCIATXXXXXXXXXXXXYGAFME 224
F I+G+ L VG + ++ NN+ E + +L A C+ T G
Sbjct: 14 FQISGLSSLIVGVWLYSSKNNFIELTPTSYSALSAAGLCVFTGVTIFIIVAVGYLGVSWS 73
Query: 225 NYLMNMAFAGAMILMFVFQLSACIAGYALKSNTVALVQKQLLSTMELYGPAS-----LEI 389
N + ++ G +IL+ + A I G K ++K +L + + +++
Sbjct: 74 NKSLLYSYIGFVILLILVHGIARITGSLHKEEAKENLRKSMLHNINTTAVVTKIGREIKL 133
Query: 390 TKLWDEVQGDFECCGVVNSSDWLAPLGTLESRGLPVSCC--SHIYGTIQLFNCTTVE--- 554
+ WD +Q + +CCGV N +DW + + P SCC H NC +
Sbjct: 134 SLTWDHLQRELQCCGVDNYTDWHYSVHWPNNLYTPDSCCDPQHFDAENGTENCGKLPDEQ 193
Query: 555 --AYPTGCAEAFGNWVQSHAAAIGAAGIFLVLMQAL 656
Y GC F +W+ H + L +++ L
Sbjct: 194 SLLYQKGCFPKFSDWLYHHIILVNWVTSILFVVEIL 229
>Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical
protein F33C8.3 protein.
Length = 282
Score = 44.8 bits (101), Expect = 6e-05
Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 5/145 (3%)
Frame = +3
Query: 42 NFLFLITGIIILAVG-----GSVQAAYNNYHEFLSERFFSLPAFCIATXXXXXXXXXXXX 206
NF F ++G+++ +G + + H F + F +
Sbjct: 16 NFAFWLSGVVVFGLGIWLLFDPAASDFFALHSTHPGAFRYVGWFLVGAGAIIILVGYFGC 75
Query: 207 YGAFMENYLMNMAFAGAMILMFVFQLSACIAGYALKSNTVALVQKQLLSTMELYGPASLE 386
GA+ N F +IL F +L+A + + + + V+ + T+ +
Sbjct: 76 IGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYVESSMYDTIRNRYSSETA 135
Query: 387 ITKLWDEVQGDFECCGVVNSSDWLA 461
+D VQ FECCGV +DWL+
Sbjct: 136 FKDAFDTVQEKFECCGVKTYTDWLS 160
>Z81086-1|CAB03120.2| 258|Caenorhabditis elegans Hypothetical
protein F53B6.1 protein.
Length = 258
Score = 44.4 bits (100), Expect = 8e-05
Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 12/175 (6%)
Frame = +3
Query: 18 VKYTLVTVNFLFLITGIIILAVGGSVQAAYNNYHEFLSERFF-SLPAFCIATXXXXXXXX 194
+K++ + + ++ I + G + A + Y E +S + + +
Sbjct: 16 IKFSYIVTALISILFSISCICYGIWLLARRSQYAELVSPSLYVDVGRILVIISILSILNY 75
Query: 195 XXXXYGAFMENYLMNMAFAGAMILMFVFQLSACIAGYALK---SNTVALVQKQLLSTMEL 365
Y F E + A A I++ V + G + ++ L K L S EL
Sbjct: 76 LICFYAIFKEMRCFVTSCAVASIVIAVMLIIGGCIGLNFRDQLTHYTPLNLKMLTSLREL 135
Query: 366 YGPASLE-ITKLWDEVQGDFECCGV---VNSSDWLAPLGTLESRG----LPVSCC 506
YG ++ IT+ WD +Q +F+CCGV N+ W + R +P SCC
Sbjct: 136 YGTHDMKGITESWDALQSNFKCCGVNGTDNAQIWKTSKWYMHQRAPKLLIPESCC 190
>Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical
protein T14G10.6 protein.
Length = 308
Score = 44.0 bits (99), Expect = 1e-04
Identities = 38/180 (21%), Positives = 75/180 (41%), Gaps = 12/180 (6%)
Frame = +3
Query: 3 KIFTTVKYTLVTVNFLFLITGIIILAVGGSVQAAYNNYHEFLSE--RFFSLPAF-CIATX 173
+I VKY++ + N +F + G +L G Q N + LS+ + + P + +
Sbjct: 33 EISCCVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVNMLSKASKLYLDPTWPLLIVG 92
Query: 174 XXXXXXXXXXXYGAFMENYLMNMAFAGAMILMFVFQLSACIAGYALKSNTVALVQKQLLS 353
G+ EN ++ + L+ + + SA + YA + + + LL+
Sbjct: 93 FLTFIIGFSGCVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLDNYI-RNLLN 151
Query: 354 TMELYGPASLEITKLWDEVQGDFECCGVVNSSDW---------LAPLGTLESRGLPVSCC 506
+ + ++ L D +Q + CCG+ + DW + + E+ G+P SCC
Sbjct: 152 DVVVGYRDDPDLQLLIDSMQETWMCCGINGADDWDRNTYFSIEAREVASPEAGGVPFSCC 211
>U50191-5|AAK31552.1| 247|Caenorhabditis elegans Tetraspanin family
protein 10 protein.
Length = 247
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/89 (25%), Positives = 41/89 (46%)
Frame = +3
Query: 393 KLWDEVQGDFECCGVVNSSDWLAPLGTLESRGLPVSCCSHIYGTIQLFNCTTVEAYPTGC 572
+ W Q F CCGV NS+DW G + +Q +C + + GC
Sbjct: 152 QFWANTQDLFGCCGVYNSTDWSVFWGVTGTN-----------NDLQALHCYP-QHFNDGC 199
Query: 573 AEAFGNWVQSHAAAIGAAGIFLVLMQALA 659
+ N + S+A +GAA + +++++ +A
Sbjct: 200 EKTIRNKISSNAQYLGAASMGVLVVEIIA 228
>AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin
family protein 14,isoform a protein.
Length = 427
Score = 36.3 bits (80), Expect = 0.021
Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 3/148 (2%)
Frame = +3
Query: 3 KIFTTVKYTLVTVNFLFLITGIIILAVGGSVQAAYNNYHEFLSERFFSLPAFCIATXXXX 182
+I +K+ + +N + + G+ ILA+G V ++ E PA I+
Sbjct: 25 EISACLKWLVFLLNSIVFLVGVGILALG--VYLFIKDFREVKLVDIILNPAILISIFGFS 82
Query: 183 XXXXXXXXY-GAFMENYLMNMAFAGAMILMFVFQLSACIAGYAL--KSNTVALVQKQLLS 353
+ GA +N + FA + L ++ ++ + + L T L LL
Sbjct: 83 ICVVSFFGFMGALRDNIFLLKCFAACVFLSYILVVAVTLVFFTLFYTDTTEGLSANWLLL 142
Query: 354 TMELYGPASLEITKLWDEVQGDFECCGV 437
+ + ++ D +Q + ECCGV
Sbjct: 143 YAVKNYHTNRNLAEIMDALQENLECCGV 170
>AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin
family protein 14,isoform b protein.
Length = 451
Score = 36.3 bits (80), Expect = 0.021
Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 3/148 (2%)
Frame = +3
Query: 3 KIFTTVKYTLVTVNFLFLITGIIILAVGGSVQAAYNNYHEFLSERFFSLPAFCIATXXXX 182
+I +K+ + +N + + G+ ILA+G V ++ E PA I+
Sbjct: 49 EISACLKWLVFLLNSIVFLVGVGILALG--VYLFIKDFREVKLVDIILNPAILISIFGFS 106
Query: 183 XXXXXXXXY-GAFMENYLMNMAFAGAMILMFVFQLSACIAGYAL--KSNTVALVQKQLLS 353
+ GA +N + FA + L ++ ++ + + L T L LL
Sbjct: 107 ICVVSFFGFMGALRDNIFLLKCFAACVFLSYILVVAVTLVFFTLFYTDTTEGLSANWLLL 166
Query: 354 TMELYGPASLEITKLWDEVQGDFECCGV 437
+ + ++ D +Q + ECCGV
Sbjct: 167 YAVKNYHTNRNLAEIMDALQENLECCGV 194
>U42832-3|AAA83573.2| 361|Caenorhabditis elegans Tetraspanin family
protein 16 protein.
Length = 361
Score = 34.7 bits (76), Expect = 0.064
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = +3
Query: 294 IAGYALKSNTVALVQKQLL--STMELYG-PASLEITKLWDEVQGDFECCGVVNSSD---- 452
I GY L S+ + + + S E YG P + I + W++ F+CCGV N +D
Sbjct: 185 ILGYDLNSHVSSSDMEHWMKHSIKEDYGNPTAPHIMEEWNKAHRQFKCCGVRNLTDFVES 244
Query: 453 -WLAPLGTLESRGLPVSCCS 509
W + +P SCC+
Sbjct: 245 KWYIMQKKHPRQRIPDSCCA 264
>U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin family
protein 17 protein.
Length = 243
Score = 32.7 bits (71), Expect = 0.26
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Frame = +3
Query: 303 YALKSNTVALVQKQL-LSTMELYGPASLEITKLWDEVQGDFECCGVVNSSDWLAPLGT-- 473
Y++K N +V+ + + T E P + +T+ D++Q +CCG + +D+++ +
Sbjct: 85 YSVKENVREIVKSKYGVMTSE---PENKMVTEFIDKLQFYEKCCGSLGPTDYISSRWSQS 141
Query: 474 -------LESRGLPVSCCSHIYGTIQL 533
+ES PVSCC+ I G L
Sbjct: 142 TNQDSEEIESPLFPVSCCTQITGASAL 168
>AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical
protein Y39B6A.6 protein.
Length = 321
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +3
Query: 21 KYTLVTVNFLFLITGIIILAVGGSVQAAYNNYHEFLSERF 140
KY + T N +FLI G ++LA+G ++ + + F+SER+
Sbjct: 58 KYGIFTANIVFLIVGGLLLAMGVWLRTD-SRFRNFISERY 96
>U53332-2|AAK31532.1| 473|Caenorhabditis elegans Tetraspanin family
protein 18 protein.
Length = 473
Score = 31.9 bits (69), Expect = 0.45
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Frame = +3
Query: 222 ENYLMNMAFAGAMILMFVFQLSACIAGYALK---SNTVALVQKQLLSTMELYGPASLEIT 392
E + +N+ I + C+ Y L S+ +L T L S+E
Sbjct: 92 EAFHVNLKTYSISIYLLCVSFMVCVLSYTLSLRISSEYDTKMTTILMTNYLNYNESMESR 151
Query: 393 KLWDEVQGDFECCGVVNSSDWLAPLGTLESRGLPVS-----CCSHIYGTIQLFNCTTV 551
+L D + ++ CCG VNS + L ++++ LP C Y ++ L C TV
Sbjct: 152 RLVDRIHIEYSCCG-VNSIEDFVDLSEVDNK-LPTQTKLWPCNEWEYCSVPLSCCKTV 207
>Z92824-4|CAB07307.2| 395|Caenorhabditis elegans B0413.2 protein.
Length = 395
Score = 31.1 bits (67), Expect = 0.79
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 21 KYTLVTVNFLFLITGIIILAVGGSVQAAYNNYHEFLSERF 140
KY + T N +FLI G + LA+G ++ + + F+SER+
Sbjct: 169 KYGIFTANIVFLIVGGLXLAMGVWLRTD-SRFRNFISERY 207
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 31.1 bits (67), Expect = 0.79
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 490 SPLDSSVPRGASQSLELTTPQHSKSP*TSSQSLVISNEAGPYSS 359
SP+ S+V +S S +TTP ++S TS S V ++ P +S
Sbjct: 456 SPVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTS 499
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 31.1 bits (67), Expect = 0.79
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 490 SPLDSSVPRGASQSLELTTPQHSKSP*TSSQSLVISNEAGPYSS 359
SP+ S+V +S S +TTP ++S TS S V ++ P +S
Sbjct: 456 SPVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTS 499
>U97592-5|AAB52873.1| 597|Caenorhabditis elegans Hypothetical
protein C14A11.6 protein.
Length = 597
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 499 VAAATFTAPSSCSTVRPSRPT 561
+AA+T T PS+ S + PSRPT
Sbjct: 539 IAASTSTPPSTTSNITPSRPT 559
>Z68221-3|CAA92495.1| 1249|Caenorhabditis elegans Hypothetical
protein W09C2.3c protein.
Length = 1249
Score = 29.5 bits (63), Expect = 2.4
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 6/142 (4%)
Frame = +3
Query: 255 AMILMFVFQLSACIAGYALKSNTVALVQKQLLSTMELYGPASLEIT-----KLWDEVQGD 419
A+I + V C+ Y + N +LV Q+ + L I+ L +
Sbjct: 386 AIIALIVLVTRFCLDHYVFEKNEFSLVDIQMFVKFFIIAVTILVISIPEGLPLAIALALT 445
Query: 420 FECCGVVNSSDWLAPLGTLESRGLPVSCCSHIYGTIQLFNCTTVEAYPTGCAEAFGNWVQ 599
+ +++ ++ + L E+ G S CS GT+ T V++Y G Q
Sbjct: 446 YSVRKMMHDNNLVRHLDACETMGNATSICSDKTGTLTTNRMTVVQSYING-NHYTSQEAQ 504
Query: 600 SHAAAI-GAAGIFLVLMQALAV 662
H A + G+ G +LM+A++V
Sbjct: 505 PHGANLPGSTG--PILMEAISV 524
>Z68221-2|CAD59229.1| 1228|Caenorhabditis elegans Hypothetical
protein W09C2.3b protein.
Length = 1228
Score = 29.5 bits (63), Expect = 2.4
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 6/142 (4%)
Frame = +3
Query: 255 AMILMFVFQLSACIAGYALKSNTVALVQKQLLSTMELYGPASLEIT-----KLWDEVQGD 419
A+I + V C+ Y + N +LV Q+ + L I+ L +
Sbjct: 365 AIIALIVLVTRFCLDHYVFEKNEFSLVDIQMFVKFFIIAVTILVISIPEGLPLAIALALT 424
Query: 420 FECCGVVNSSDWLAPLGTLESRGLPVSCCSHIYGTIQLFNCTTVEAYPTGCAEAFGNWVQ 599
+ +++ ++ + L E+ G S CS GT+ T V++Y G Q
Sbjct: 425 YSVRKMMHDNNLVRHLDACETMGNATSICSDKTGTLTTNRMTVVQSYING-NHYTSQEAQ 483
Query: 600 SHAAAI-GAAGIFLVLMQALAV 662
H A + G+ G +LM+A++V
Sbjct: 484 PHGANLPGSTG--PILMEAISV 503
>Z68221-1|CAB61039.2| 1252|Caenorhabditis elegans Hypothetical
protein W09C2.3a protein.
Length = 1252
Score = 29.5 bits (63), Expect = 2.4
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 6/142 (4%)
Frame = +3
Query: 255 AMILMFVFQLSACIAGYALKSNTVALVQKQLLSTMELYGPASLEIT-----KLWDEVQGD 419
A+I + V C+ Y + N +LV Q+ + L I+ L +
Sbjct: 389 AIIALIVLVTRFCLDHYVFEKNEFSLVDIQMFVKFFIIAVTILVISIPEGLPLAIALALT 448
Query: 420 FECCGVVNSSDWLAPLGTLESRGLPVSCCSHIYGTIQLFNCTTVEAYPTGCAEAFGNWVQ 599
+ +++ ++ + L E+ G S CS GT+ T V++Y G Q
Sbjct: 449 YSVRKMMHDNNLVRHLDACETMGNATSICSDKTGTLTTNRMTVVQSYING-NHYTSQEAQ 507
Query: 600 SHAAAI-GAAGIFLVLMQALAV 662
H A + G+ G +LM+A++V
Sbjct: 508 PHGANLPGSTG--PILMEAISV 527
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 29.5 bits (63), Expect = 2.4
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
Frame = +3
Query: 381 LEITKLWDEVQGDFECCGV------VNSSDWLAPLGTLESRGLPVSCCSHIYGTIQLFNC 542
L + WD++ + CCGV N+S W L + P C +G ++ + C
Sbjct: 171 LLVKTAWDKIMIEKSCCGVDSKIGEFNNSGWY-QLNHGRYQFPPACCPPDEHGRLRPY-C 228
Query: 543 TTVEAYPTGC----AEAFGNWVQSHAAAIGAAGIFLVLMQ 650
T+ + GC AE+F V SH + + L+Q
Sbjct: 229 NTIMRHSHGCYAKIAESFEE-VTSHFKIVSWTVVLFALIQ 267
>AY438645-1|AAR00672.1| 1249|Caenorhabditis elegans membrane Calcium
ATPase (136.9kD) (mca-1) protein.
Length = 1249
Score = 29.5 bits (63), Expect = 2.4
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 6/142 (4%)
Frame = +3
Query: 255 AMILMFVFQLSACIAGYALKSNTVALVQKQLLSTMELYGPASLEIT-----KLWDEVQGD 419
A+I + V C+ Y + N +LV Q+ + L I+ L +
Sbjct: 386 AIIALIVLVTRFCLDHYVFEKNEFSLVDIQMFVKFFIIAVTILVISIPEGLPLAIALALT 445
Query: 420 FECCGVVNSSDWLAPLGTLESRGLPVSCCSHIYGTIQLFNCTTVEAYPTGCAEAFGNWVQ 599
+ +++ ++ + L E+ G S CS GT+ T V++Y G Q
Sbjct: 446 YSVRKMMHDNNLVRHLDACETMGNATSICSDKTGTLTTNRMTVVQSYING-NHYTSQEAQ 504
Query: 600 SHAAAI-GAAGIFLVLMQALAV 662
H A + G+ G +LM+A++V
Sbjct: 505 PHGANLPGSTG--PILMEAISV 524
>AY438644-1|AAR00671.1| 1252|Caenorhabditis elegans membrane Calcium
ATPase (136.6kD) (mca-1) protein.
Length = 1252
Score = 29.5 bits (63), Expect = 2.4
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 6/142 (4%)
Frame = +3
Query: 255 AMILMFVFQLSACIAGYALKSNTVALVQKQLLSTMELYGPASLEIT-----KLWDEVQGD 419
A+I + V C+ Y + N +LV Q+ + L I+ L +
Sbjct: 389 AIIALIVLVTRFCLDHYVFEKNEFSLVDIQMFVKFFIIAVTILVISIPEGLPLAIALALT 448
Query: 420 FECCGVVNSSDWLAPLGTLESRGLPVSCCSHIYGTIQLFNCTTVEAYPTGCAEAFGNWVQ 599
+ +++ ++ + L E+ G S CS GT+ T V++Y G Q
Sbjct: 449 YSVRKMMHDNNLVRHLDACETMGNATSICSDKTGTLTTNRMTVVQSYING-NHYTSQEAQ 507
Query: 600 SHAAAI-GAAGIFLVLMQALAV 662
H A + G+ G +LM+A++V
Sbjct: 508 PHGANLPGSTG--PILMEAISV 527
>AJ223616-1|CAA11491.1| 1228|Caenorhabditis elegans calcium ATPase
protein.
Length = 1228
Score = 29.5 bits (63), Expect = 2.4
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 6/142 (4%)
Frame = +3
Query: 255 AMILMFVFQLSACIAGYALKSNTVALVQKQLLSTMELYGPASLEIT-----KLWDEVQGD 419
A+I + V C+ Y + N +LV Q+ + L I+ L +
Sbjct: 365 AIIALIVLVTRFCLDHYVFEKNEFSLVDIQMFVKFFIIAVTILVISIPEGLPLAIALALT 424
Query: 420 FECCGVVNSSDWLAPLGTLESRGLPVSCCSHIYGTIQLFNCTTVEAYPTGCAEAFGNWVQ 599
+ +++ ++ + L E+ G S CS GT+ T V++Y G Q
Sbjct: 425 YSVRKMMHDNNLVRHLDACETMGNATSICSDKTGTLTTNRMTVVQSYING-NHYTSQEAQ 483
Query: 600 SHAAAI-GAAGIFLVLMQALAV 662
H A + G+ G +LM+A++V
Sbjct: 484 PHGANLPGSTG--PILMEAISV 503
>DQ178635-1|ABD75714.1| 361|Caenorhabditis elegans tetraspanin
family protein protein.
Length = 361
Score = 29.1 bits (62), Expect = 3.2
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Frame = +3
Query: 291 CIAGYALK---SNTVALVQKQLLSTMELYGPASLEITKLWDEVQGDFECCGVVNSSDWLA 461
C+ Y L S+ +L T L S+E +L D + ++ CCG VNS +
Sbjct: 3 CVLSYTLSLRISSEYDTKMTTILMTNYLNYNESMESRRLVDRIHIEYSCCG-VNSIEDFV 61
Query: 462 PLGTLESRGLPVS-----CCSHIYGTIQLFNCTTV 551
L ++++ LP C Y ++ L C TV
Sbjct: 62 DLSEVDNK-LPTQTKLWPCNEWEYCSVPLSCCKTV 95
>AL032626-14|CAA21534.1| 163|Caenorhabditis elegans Hypothetical
protein Y37D8A.16 protein.
Length = 163
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 176 YYIPHILLRFLWSLHGELLNEHGVCGCHDLDVRFSTIGLHSWLCIEEQHGSFSSKAAV 349
Y + IL+ FL + GE + + C ++ FST G+ WL I G+ S + +
Sbjct: 56 YCLVSILMSFLLAKRGE---DTPLTNCGFAEIIFSTAGIIGWLIIIGIGGTISQRTII 110
>AF039047-15|AAM15588.1| 1040|Caenorhabditis elegans Human mlk
(mixed lineage kinase)homolog protein 1, isoform a
protein.
Length = 1040
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 203 TGEGYEEYNNSRRYTKGGKREKPLR 129
T +G+E+ N ++RY K +++ PLR
Sbjct: 718 TADGWEDPNTTKRYVKDLEKDTPLR 742
>Z46812-2|CAA86844.1| 1027|Caenorhabditis elegans Hypothetical
protein ZK675.2 protein.
Length = 1027
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -2
Query: 590 VTERFGTTSRVGLDGRTVEQLD 525
V E FG TSRVG RT EQL+
Sbjct: 814 VQEMFGKTSRVGNMARTDEQLN 835
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +3
Query: 414 GDFECCGVVNSSDWLAPLGTLESRGLPVSCCSHIYGTIQLF 536
G F+ +++ +W PL T+E CC Y + +
Sbjct: 182 GGFDISEYISNGEWALPLTTVERNEKFYDCCPEPYPDVHFY 222
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +3
Query: 414 GDFECCGVVNSSDWLAPLGTLESRGLPVSCCSHIYGTIQLF 536
G F+ +++ +W PL T+E CC Y + +
Sbjct: 182 GGFDISEYISNGEWALPLTTVERNEKFYDCCPEPYPDVHFY 222
>AL021493-2|CAA16393.1| 382|Caenorhabditis elegans Hypothetical
protein Y51A2B.2 protein.
Length = 382
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +3
Query: 255 AMILMFVFQLSACIAGYALK---SNTVALVQKQLLSTMELYGPAS 380
AM + +FQ S+C+ +A +N A + K+ ++TME+ A+
Sbjct: 300 AMFVFIIFQASSCVFLFAQSVQITNVGAFLVKRFVNTMEILAGAA 344
>AF068711-2|AAC17776.1| 414|Caenorhabditis elegans Hypothetical
protein R09A1.2 protein.
Length = 414
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 500 TYGEPSGFQRPEGRKPVTRVNYT 432
TYGE SG+Q+P G KP ++T
Sbjct: 324 TYGESSGYQKP-GIKPTITSSFT 345
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +3
Query: 414 GDFECCGVVNSSDWLAPLGTLESRGLPVSCCSHIYGTIQLF 536
G F+ +++ +W PL T+E CC Y + +
Sbjct: 182 GGFDISEYISNGEWALPLTTVERNEKFYDCCPEPYPDVHFY 222
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +3
Query: 414 GDFECCGVVNSSDWLAPLGTLESRGLPVSCCSHIYGTIQLF 536
G F+ +++ +W PL T+E CC Y + +
Sbjct: 182 GGFDISEYISNGEWALPLTTVERNEKFYDCCPEPYPDVHFY 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,861,457
Number of Sequences: 27780
Number of extensions: 372230
Number of successful extensions: 1064
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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