Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18p20f
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    58   6e-11
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   4.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   4.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   4.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   4.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 58.4 bits (135), Expect = 6e-11
 Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 3/225 (1%)
 Frame = +3

Query: 18  VKYTLVTVNFLFLITGIIILAVGGSVQAAYNNYHEFLSERFFSLPAF-CIATXXXXXXXX 194
           +KY L   NF+F + G+ IL +G  +        + + E   + P+   I          
Sbjct: 8   IKYLLFIFNFVFAVCGLGILTLGVLIHLQILGVSKQI-ETGLAFPSITLIVLGSIIFVIS 66

Query: 195 XXXXYGAFMENYLMNMAFAGAMILMFVFQLSACIAGYALKSN--TVALVQKQLLSTMELY 368
                GA  E++ M + FA  ++ + + Q++  +  + +  N      + ++       Y
Sbjct: 67  FFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGY 126

Query: 369 GPASLEITKLWDEVQGDFECCGVVNSSDWLAPLGTLESRGLPVSCCSHIYGTIQLFNCTT 548
              S E     D +Q + +CCGV + SD+         + +P SCC+    + +   C+ 
Sbjct: 127 FLNS-ESKDFIDFIQKNLQCCGVHSLSDY-------NDKPIPASCCN----SPENNTCSI 174

Query: 549 VEAYPTGCAEAFGNWVQSHAAAIGAAGIFLVLMQALAVAGAVWMA 683
             +Y  GC EA  + V+      G+  I + +++ + +  A+ +A
Sbjct: 175 SNSYTNGCVEALKDTVKLAGTVFGSVAIAIAIVELIGIICALCLA 219


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 210 GAFMENYLMNMAFAGA 257
           G F +NYL+N++F  A
Sbjct: 368 GVFYKNYLLNVSFIDA 383


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 135 SPIETHGNYYRQLAPSLR 82
           SP+ +HG YY   AP ++
Sbjct: 266 SPLASHGLYYVNTAPFMK 283


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 210 GAFMENYLMNMAFAGA 257
           G F +NYL+N++F  A
Sbjct: 458 GVFYKNYLLNVSFIDA 473


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 23  IHIGDSEFFVLDNRNYNIGCRRL 91
           IH  ++  +  +N NYN  C++L
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCKKL 112


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 23  IHIGDSEFFVLDNRNYNIGCRRL 91
           IH  ++  +  +N NYN  C++L
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCKKL 112


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 23  IHIGDSEFFVLDNRNYNIGCRRL 91
           IH  ++  +  +N NYN  C++L
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCKKL 112


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 23  IHIGDSEFFVLDNRNYNIGCRRL 91
           IH  ++  +  +N NYN  C++L
Sbjct: 90  IHNNNNYKYNYNNNNYNNNCKKL 112


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 500 TYGEPSGFQRPEGRK 456
           ++GEP G +RP+ R+
Sbjct: 471 SFGEPLGLRRPQERE 485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,542
Number of Sequences: 438
Number of extensions: 4856
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)