Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18p13r
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   4.3  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    23   4.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   4.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.7  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   5.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   10.0 

>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 192 QRLIDIENIECYNNRSIY*WRQYLRA*WK 106
           +R I+I +  C   R I  W Q  R  WK
Sbjct: 36  RRRIEIAHALCLTERQIKIWFQNRRMKWK 64


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 192 QRLIDIENIECYNNRSIY*WRQYLRA*WK 106
           +R I+I +  C   R I  W Q  R  WK
Sbjct: 36  RRRIEIAHALCLTERQIKIWFQNRRMKWK 64


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 192 QRLIDIENIECYNNRSIY*WRQYLRA*WK 106
           +R I+I +  C   R I  W Q  R  WK
Sbjct: 298 RRRIEIAHALCLTERQIKIWFQNRRMKWK 326


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 209 CLNYGRVLLLDLLFC 253
           C   GR+LL+  +FC
Sbjct: 5   CSRLGRILLISAVFC 19


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 608 TVRLVGGGVGSTFVTLQFRNSARRGYHFNVQI 513
           +VRL+  G    FVT+Q +      ++ N+ I
Sbjct: 301 SVRLISSGFFDNFVTVQIQPLKNELFNANIGI 332


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +2

Query: 161 HSMFSMSINRCMKSVDCL--NYGRVL 232
           HS+ S+ I+  M SV+C+  N G +L
Sbjct: 123 HSVTSVGIDLEMPSVECIVFNSGTIL 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,084
Number of Sequences: 438
Number of extensions: 4173
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)