Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18p12f
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subu...    28   1.2  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    27   2.8  
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    26   6.4  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    26   6.4  
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    26   6.4  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   6.4  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   8.4  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   8.4  

>SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subunit
           Tfg3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 241

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +1

Query: 604 QNENFHKSIIVDVNGVKIGLIGYLTPDTELLKHTEEVE 717
           Q E++H+ I +++N  + GL+  LT   E+  +++E E
Sbjct: 111 QQEHYHEDIELNINATRPGLLKALTATGEVPGYSDEGE 148


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -2

Query: 397 TAPEGLRLSELLCEPALPGKRPSRNLRSIFLHSCRLRYTLRSVARSVRTWRACH 236
           TA   + +S LL EPA P     +     FL      Y ++SVA S+  W ACH
Sbjct: 87  TASRRIPVSSLLSEPA-PHGLAGQPTHPTFL------YYIQSVAPSLCLWDACH 133


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 224 ISSSNVPSLFVRATLQPVSVTTANVAISCVKNSIFFCD 111
           +++ +VP LF RATL      T  V+  CV ++  + D
Sbjct: 290 VATCSVPFLFKRATLWERDPLTREVSAFCVTDAPLWMD 327


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 595 SAEQNENFHKSIIVDVNGVKIGLIGYLTPD--TELLKHTEEVEYID 726
           +A++N ++ + I +D+N ++  L G  TPD  T + K  E V+  D
Sbjct: 323 AADENAHYDQIIEIDLNTLEPHLNGPFTPDLATPISKFKEAVKKND 368


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 508 NNEINETGKLSPLLQTI-QTNITISNVILKSAEQNENFHKSIIVDVNGVKIGLIGYLTP 681
           NN  +E+ KL  +   + Q   T++ ++ K  E+N++   SIIV     +   + YL P
Sbjct: 218 NNSSDESKKLYCVYVAVGQKRSTVAQLVQK-LEENDSLKYSIIVAATASESAPLQYLAP 275


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -1

Query: 308 PAFLSASVHTPLSCEVCSNLACMSLLCRISSSN 210
           P   SA   TP+ C   SN+    L   ISSSN
Sbjct: 403 PERSSAVKTTPMKCSSLSNIYTSDLFFAISSSN 435


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = +1

Query: 439 AQYKWKIAAEFINALQPDAVSLGNNEINETGKLSPL----LQTIQTNITISNVILKSAEQ 606
           + Y   I+ + +N+    A+      I+ETG    L    LQT + NI IS+  L+    
Sbjct: 328 SDYTTGISVQNLNSANL-AIHYNAKRISETGYSFDLCFSTLQTFENNIQISSEYLQQHLI 386

Query: 607 NENFHKSIIVDVNGVK 654
            E+F  +I ++ N  +
Sbjct: 387 GESFDGNISLEPNSTE 402


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 508 NNEINETGKLSPLLQTIQTNI 570
           NNE NE G+ S +  +I+TN+
Sbjct: 481 NNEENEDGEESDIFDSIETNL 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,535
Number of Sequences: 5004
Number of extensions: 57343
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)