Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18p06r
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po...    88   2e-18
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch...    68   2e-12
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    43   5e-05
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.1  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.8  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   4.8  

>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 87.8 bits (208), Expect = 2e-18
 Identities = 43/46 (93%), Positives = 44/46 (95%)
 Frame = -3

Query: 893 GFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 756
           GFAIGIVGDAGVRGTAQQPRLFV MILILIFAEVLGLYGLIVA+ L
Sbjct: 106 GFAIGIVGDAGVRGTAQQPRLFVAMILILIFAEVLGLYGLIVALLL 151


>SPAC732.01 |vma11||V-type ATPase proteolipid
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 31/46 (67%), Positives = 38/46 (82%)
 Frame = -3

Query: 893 GFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 756
           G+AIG+VGD GV+   +Q R+FV M+LILIFAEVLGLYGLIV + L
Sbjct: 108 GYAIGVVGDRGVQSFMRQDRIFVSMVLILIFAEVLGLYGLIVGLIL 153



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 8/46 (17%), Positives = 26/46 (56%)
 Frame = -3

Query: 893 GFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 756
           G+   + G       A +P + +  ++ ++ + ++G+YGL++++ +
Sbjct: 30  GYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGVYGLVMSVLI 75


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 19/46 (41%), Positives = 28/46 (60%)
 Frame = -3

Query: 893 GFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 756
           G  +GI G +     AQ   LFV ++++ IF  VLGL+GLIV + +
Sbjct: 146 GVCVGITGSSAALADAQDASLFVKVLVVEIFGSVLGLFGLIVGLLI 191



 Score = 32.7 bits (71), Expect = 0.073
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -3

Query: 890 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAI 762
           + I I G + + G  + PR+    ++ +IF EV+ +Y LI+AI
Sbjct: 63  WGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIAI 105


>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 281

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = +3

Query: 750 CVQVDGDD-KSV--KTQYFSENKNKNHSDE*PRLLSSTT 857
           C++VD +D K +  K+QY +EN N N  +  P L S+TT
Sbjct: 233 CIEVDSEDWKDLVWKSQYATENANTNSINNSP-LSSNTT 270


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 157 NSARDRYTVPWGFNGFINYI 216
           NS  DRYT+P+   G I+Y+
Sbjct: 339 NSGSDRYTIPFFLQGNIDYV 358


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 356 RFLSTYQFYLRVTSSATSEDINLDYFSNKAK 264
           R +S    Y+RV S+    +INL YF + AK
Sbjct: 497 RAVSLQPQYVRVRSNMAVSNINLGYFEDAAK 527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,615,936
Number of Sequences: 5004
Number of extensions: 75445
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)