Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18p04f
(761 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734... 140 8e-34
04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646... 98 6e-21
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36... 93 2e-19
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 64 1e-10
01_05_0146 + 18591235-18591345,18591662-18591830,18592282-185923... 48 8e-06
01_05_0145 + 18588201-18588242,18588925-18589044,18589201-185894... 41 0.001
09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591 33 0.25
11_04_0332 + 16465360-16465769,16465873-16466272,16466379-164664... 29 5.3
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 5.3
09_04_0713 - 19675437-19675551,19675872-19676017,19676226-196762... 28 9.3
06_01_0390 + 2802334-2802339,2802461-2802618,2802755-2802826,280... 28 9.3
>08_02_1358 -
26372559-26372887,26373183-26373262,26373287-26373420,
26373546-26373689,26373809-26373919,26374165-26374305,
26376839-26376964,26377072-26377263
Length = 418
Score = 140 bits (340), Expect = 8e-34
Identities = 76/198 (38%), Positives = 111/198 (56%), Gaps = 4/198 (2%)
Frame = +2
Query: 179 ITKYGYPVEVHKVVTEDGYILEMQRIPHGR----DQNNRPDPRKPAVLVMHGLFASAADW 346
+ +GYP E H+V T+DGYIL +QRIP GR R+P VL+ HG+ W
Sbjct: 53 VAPFGYPCEEHEVTTQDGYILGLQRIPRGRIGGVTGGGAAAARQP-VLLQHGVLVDGMTW 111
Query: 347 VLMGPGLGLAYILAEAGYDVWLGNARGTYYSRAHTKLDPDNDSEFWKFSWEEIGTRDLPA 526
+L P L YILA+ G+DVW+ N RGT +S H LDP + S +W +SW++I D+PA
Sbjct: 112 LLGSPEESLPYILADQGFDVWIANNRGTRWSSRHVSLDPKSRS-YWNWSWDDIVVNDMPA 170
Query: 527 MIDYTLKVAGKRRLHYIGHSQGTTVFWAMGSLRPEYNSKIIAMQAYAPVAYLEFNANRLL 706
++DY G++ HY+GHS GT V A S K+ + +PVAYL + +
Sbjct: 171 IVDYVCSHTGQKP-HYVGHSMGTLVALAAFS-EGRMVDKLKSAALLSPVAYLS-HITTPI 227
Query: 707 KLIAPHANSIEALTSLIG 760
++ A + E ++ L+G
Sbjct: 228 GVVLAKAFAGELISDLLG 245
>04_03_0156 -
11963580-11963914,11964422-11964517,11964618-11964697,
11965250-11965290,11965402-11965548,11965922-11966035,
11968842-11968961,11969491-11969631,11969892-11970014,
11970357-11970566
Length = 468
Score = 98.3 bits (234), Expect = 6e-21
Identities = 46/95 (48%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Frame = +2
Query: 179 ITKYGYPVEVHKVVTEDGYILEMQRIPHGRDQN--NRPDPRKPAVLVMHGLFASAADWVL 352
+ +GY E H V TEDGYIL +QRIP GR + K VL+ HGL W++
Sbjct: 59 VAPFGYACEEHTVTTEDGYILSLQRIPSGRGETAAGGGGGGKVPVLLQHGLMMDGVTWLM 118
Query: 353 MGPGLGLAYILAEAGYDVWLGNARGTYYSRAHTKL 457
P L YILA+ GYDVW+ N+RGT YSR HT L
Sbjct: 119 NSPNESLGYILADNGYDVWIANSRGTVYSRHHTSL 153
Score = 60.1 bits (139), Expect = 2e-09
Identities = 24/80 (30%), Positives = 49/80 (61%)
Frame = +2
Query: 479 FWKFSWEEIGTRDLPAMIDYTLKVAGKRRLHYIGHSQGTTVFWAMGSLRPEYNSKIIAMQ 658
+W +SW+E+ ++DL A++ Y AG++++HY+GHS GT + A S + + + +
Sbjct: 200 YWNWSWDELSSKDLSAVVQYVYSQAGQQKMHYVGHSLGTLIALAALSDQQQQIGMLRSAG 259
Query: 659 AYAPVAYLEFNANRLLKLIA 718
+P+A+L+ ++ L + A
Sbjct: 260 LLSPIAFLDKMSSPLARAAA 279
>09_01_0014 +
357398-357583,360213-360323,360520-360676,361067-361233,
362012-362122,362206-362349,362436-362476,364134-364174,
364175-364261,365402-365724
Length = 455
Score = 93.1 bits (221), Expect = 2e-19
Identities = 44/115 (38%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Frame = +2
Query: 176 LITKYGYPVEVHKVVTEDGYILEMQRIPHGRDQNNRPDPRKPAVLVMHGLFASAADWVLM 355
L+ GYP H V T+DG++L +Q IPHG+ N D P V + HGLF W +
Sbjct: 50 LLLPLGYPCTEHNVETKDGFLLSLQHIPHGK--NKAADSTGPPVFLQHGLFQGGDTWFIN 107
Query: 356 GPGLGLAYILAEAGYDVWLGNARGTYYSRAHTKLDPDN--DSEFWKFSWEEIGTR 514
L YILA+ G+DVW+GN RGT +S+ H+ + ++ W W +G R
Sbjct: 108 SAEQSLGYILADNGFDVWIGNVRGTRWSKGHSTFSVHDKVNTLHWN-EWRALGLR 161
Score = 54.4 bits (125), Expect = 9e-08
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Frame = +2
Query: 479 FWKFSWEEIGTRDLPAMIDYTLKVAGKRRLHYIGHSQGTTVFWAMGSLRPEYNSKIIAMQ 658
FW +SW+E+ DL AM+ Y V + ++ Y+GHSQGT + A ++ PE I +
Sbjct: 209 FWDWSWQELAEYDLLAMLGYVYTVT-QSKILYVGHSQGTIMGLAALTM-PEIVKMISSAA 266
Query: 659 AYAPVAYLE-FNANRLLKLIAPHANSI 736
P++YL+ +A+ +L+ +A H + +
Sbjct: 267 LLCPISYLDHVSASFVLRAVAMHLDQM 293
>06_03_0852 -
25371461-25371783,25372080-25372159,25372472-25372554,
25372597-25372740,25372836-25372946,25373238-25373354,
25373436-25373562,25374160-25374296
Length = 373
Score = 64.1 bits (149), Expect = 1e-10
Identities = 26/53 (49%), Positives = 35/53 (66%)
Frame = +2
Query: 188 YGYPVEVHKVVTEDGYILEMQRIPHGRDQNNRPDPRKPAVLVMHGLFASAADW 346
+GYP E +KV TEDGYIL ++RIPHG +N +P VL+ HGL + +W
Sbjct: 80 FGYPCEEYKVTTEDGYILSLKRIPHGPHDSNTSTEMRPPVLLFHGLMVAYWEW 132
Score = 56.8 bits (131), Expect = 2e-08
Identities = 28/80 (35%), Positives = 47/80 (58%)
Frame = +2
Query: 479 FWKFSWEEIGTRDLPAMIDYTLKVAGKRRLHYIGHSQGTTVFWAMGSLRPEYNSKIIAMQ 658
+W++SW+E+ + DLPA++ + G+ ++HYIGHS GT + A S + + +
Sbjct: 129 YWEWSWDELASYDLPAVLQFAYDHTGE-KIHYIGHSLGTLMILAAFS-EHKLLDVVRSAV 186
Query: 659 AYAPVAYLEFNANRLLKLIA 718
P+AYL ++LLKL A
Sbjct: 187 LLCPIAYLSRTKSKLLKLAA 206
>01_05_0146 +
18591235-18591345,18591662-18591830,18592282-18592334,
18592369-18592487,18592618-18593698
Length = 510
Score = 48.0 bits (109), Expect = 8e-06
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Frame = +2
Query: 392 AGYDVWLGNARGTYYSRAHTKLDPDNDS-EFWKFSWEEIGTRDLPAMIDYTLKV----AG 556
AGYDV+LGN RG SR H +D + S ++WK+S E GT+D+PA+++ K+ G
Sbjct: 125 AGYDVFLGNLRGLV-SREH--VDKNISSYKYWKYSVNEHGTKDMPAIVEEIHKIKTSELG 181
Query: 557 KRRLH 571
K R H
Sbjct: 182 KSRPH 186
>01_05_0145 +
18588201-18588242,18588925-18589044,18589201-18589457,
18589980-18590048,18590091-18590115
Length = 170
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +2
Query: 176 LITKYGYPVEVHKVVTEDGYILEMQRIP 259
+IT+ GYP E KVVT DGY+L ++RIP
Sbjct: 135 VITELGYPFEAIKVVTSDGYVLLLERIP 162
>09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591
Length = 455
Score = 33.1 bits (72), Expect = 0.25
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 383 LAEAGYDVWLGNARGTYYSRA-HTKLDPDNDSEFWKFSWEEIGTRDLPAMIDYTLKVAGK 559
L +AG+ V+ + GTY+ HT DND EF ++ E+G +P + Y GK
Sbjct: 370 LKDAGFIVYPSS--GTYFVMVDHTPFGFDNDIEFCEYLIREVGVVAIPPSVFYLNPEDGK 427
Query: 560 RRLHYIGHSQGTTVFWAMGSLRPEYNSK 643
+ + T+ A+ ++ + K
Sbjct: 428 NLVRFTFCKDDETLRAAVERMKTKLRKK 455
>11_04_0332 +
16465360-16465769,16465873-16466272,16466379-16466423,
16467113-16467139,16467201-16467266,16467889-16467950,
16468049-16468123,16468218-16468383,16468611-16468734,
16469737-16469843,16469992-16470102
Length = 530
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = +2
Query: 374 AYILAEAGYDVWLGNARGTYYSRAHTKLDPDND-SEFWKFSWEEIGTRDLPAMIDYTLK 547
A +L E G +W GNA Y + D + F W G DYT K
Sbjct: 315 AKVLQEKGIHIWDGNASREYLDSVGLAHREEGDLGPVYGFQWRHFGAEYTDMHADYTGK 373
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Frame = +1
Query: 40 LYLCYPGDCSPIPS--------CGLRRGTIQAGRSGFPLLYQCN*RCSSG 165
L LC+PG C P P+ CG R T + + +CN R G
Sbjct: 214 LLLCHPGPCPPCPAIVPNAMCFCGSHRETRRCSHQRYSCSGKCNKRLGCG 263
>09_04_0713 -
19675437-19675551,19675872-19676017,19676226-19676259,
19676333-19676473,19676860-19676924,19677022-19677108,
19677186-19677254,19677457-19677548,19677781-19677853,
19678129-19678205,19678490-19678684,19678804-19678861,
19679423-19679517,19680071-19680191
Length = 455
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +2
Query: 158 LLDIVGLITKYGYPVEVHKVVTEDGYILEMQRIPHGRDQNNRPDPRKPAVLVMHG 322
LL V L TKYG + V+ G IL + H D+ P+P K + V+ G
Sbjct: 117 LLTWVFLKTKYGLRKFIGVVICVAGIILVVFSDVHASDRAKGPNPLKGDLFVIAG 171
>06_01_0390 +
2802334-2802339,2802461-2802618,2802755-2802826,
2802967-2803114,2803234-2803503,2803741-2803904,
2804184-2804236,2804302-2804496,2804597-2804694,
2804787-2804891
Length = 422
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/105 (20%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Frame = +2
Query: 305 VLVMHGLFASAADW----VLMGPGLGLAYILAEAGYDVWLGNARGTYYSRAHT--KLDPD 466
++++HG+ AS +DW ++ LG + + + + N ++ + T +
Sbjct: 46 LILVHGIIASPSDWTYGEAVLKKRLGDNFFIYGSYIGLHFANENNSFLAIKLTVNYIIAA 105
Query: 467 NDSEFWKFSWEEI---GTRDLPAMIDYTLKVAGKRRLHYIGHSQG 592
+ S + +++ I G R ++D K+AG R++ ++ HS G
Sbjct: 106 SSSNIYTKTFDGIDVAGRRLANEVLDVIQKMAGLRKISFLAHSLG 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,826,738
Number of Sequences: 37544
Number of extensions: 452051
Number of successful extensions: 1195
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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