Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18p03f
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 36 0.006
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 33 0.043
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 33 0.043
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 32 0.076
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 31 0.13
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 31 0.17
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 31 0.17
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 30 0.40
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 29 0.53
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz... 29 0.53
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 29 0.70
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.93
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 27 2.8
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 27 2.8
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 27 2.8
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 27 2.8
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 27 3.8
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 26 5.0
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 26 5.0
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 5.0
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 5.0
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 26 5.0
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 26 5.0
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 26 5.0
SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.0
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 26 6.6
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 6.6
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 6.6
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 26 6.6
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 6.6
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 6.6
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 25 8.7
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 25 8.7
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 25 8.7
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual 25 8.7
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 25 8.7
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 35.9 bits (79), Expect = 0.006
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 11/148 (7%)
Frame = +3
Query: 315 VQKLAXXXXXXXXXSTYNQIEDTTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKS-- 488
V+K+ T +Q DT +ED +D I + + +VP+ +E +
Sbjct: 193 VEKIETSTSVENAYITNSQYNDTLDMEDQTSDLITTFEHENEDHEVHEVPSIHGMEGTFE 252
Query: 489 TVESTLQKENSSQ--TEKTVLNITDDK---GENDKDNTLEDNEKTKKPSKSITDSSTWGE 653
TV T + N + + VLN T + D + LED + K+ +SST +
Sbjct: 253 TVNLTSEAGNEKEFNNDSVVLNTTPKEMQISSLDAVDKLEDKPVSNDNIKANIESSTTVD 312
Query: 654 YA-SYITYKDNEA---VYTDPSSGQAYT 725
A S + ++NE+ V+ SSGQ T
Sbjct: 313 RASSQLESENNESTFFVHNQNSSGQHQT 340
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 33.1 bits (72), Expect = 0.043
Identities = 23/113 (20%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Frame = +3
Query: 375 EDTTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENS-SQTEKTVLNI 551
++++S +++ + + V + + + S E S+ ES + +S S+ E+ V+
Sbjct: 134 KESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEK 193
Query: 552 TDDKGENDKDNTLEDNEKTKKPSKSITDSSTWGEYASYITYKDNEAVYTDPSS 710
T++K E +++ D+E + S DS + + S + +D + +P+S
Sbjct: 194 TEEKKEGSSESS-SDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPAS 245
Score = 25.4 bits (53), Expect = 8.7
Identities = 20/96 (20%), Positives = 42/96 (43%)
Frame = +3
Query: 357 STYNQIEDTTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEK 536
S+ ++ E ++S + + ++ ++ K S +SDS S S +SS +
Sbjct: 172 SSESESESSSSESEEEEEVVEKTEEKKEGSSE---SSSDSESSSDSSSESGDSDSSSDSE 228
Query: 537 TVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSST 644
+ + D+K + + E K KPS+ ++ T
Sbjct: 229 SESSSEDEKKRKAEPASEERPAKITKPSQDSNETCT 264
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 33.1 bits (72), Expect = 0.043
Identities = 19/79 (24%), Positives = 39/79 (49%)
Frame = +3
Query: 375 EDTTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNIT 554
++ T + + NDK +++ QTL+ + + E ST +++ E TE V ++
Sbjct: 606 DEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTSNLLEQLKMTEAEVDSLR 665
Query: 555 DDKGENDKDNTLEDNEKTK 611
+ EN + L+++E K
Sbjct: 666 KENEENKQVIALKESELVK 684
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 32.3 bits (70), Expect = 0.076
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 366 NQIEDTTSVEDINNDKIQNVQDVKTTSQTLDVP-TSDSIEKSTVESTLQKENSSQTEKTV 542
N ED S + + +++ N + K T +T P T +IE+S V +++ +++ T T+
Sbjct: 345 NVKEDIVSTANDDANELDNTSE-KATLETSSKPVTEQAIEQSEVVQEVEEGDTNMTTNTI 403
Query: 543 LNITDD 560
L TD+
Sbjct: 404 LKPTDE 409
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.5 bits (68), Expect = 0.13
Identities = 19/87 (21%), Positives = 39/87 (44%)
Frame = +3
Query: 366 NQIEDTTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVL 545
N+ +T E + ++K +N ++ + + +++ KSTVES+ +E + E
Sbjct: 426 NEENNTPETEGLEDEKEENNTAAESLINQEETTSGEAVTKSTVESSANEEEAEPNEIIEE 485
Query: 546 NITDDKGENDKDNTLEDNEKTKKPSKS 626
N + T E+ EK S++
Sbjct: 486 NAVKSLLNQEGPATNEEVEKNNANSEN 512
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 31.1 bits (67), Expect = 0.17
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Frame = +3
Query: 369 QIEDTTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLN 548
+I+D+ SV+D N K Q + S+ + T++S T S ++ Q +
Sbjct: 3 EIKDS-SVKDENPGK-QEESSIAVESREMSTATNNSKNIETTSSNGAEDIKIQRDVGDDK 60
Query: 549 ITDDKGENDKDNTLEDNEKTKKPSKSI-TD--SSTWGEYASYITYKDN 683
DDK NDK + + E K K+I TD S+ G+ S + K N
Sbjct: 61 DLDDKEANDKSSKGLEEESDSKDRKTIETDQPSNNIGDIKSQKSEKSN 108
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 31.1 bits (67), Expect = 0.17
Identities = 23/96 (23%), Positives = 44/96 (45%)
Frame = +3
Query: 357 STYNQIEDTTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEK 536
S+ + E +S ED ND + D ++ S + D +S S S ES+ + +SS +
Sbjct: 166 SSSSSSESESSSED--NDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSS 223
Query: 537 TVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSST 644
+ + D D++ ++ + S +DSS+
Sbjct: 224 SS---ESESSSEDNDSSSSSSDSESESSSEDSDSSS 256
Score = 30.3 bits (65), Expect = 0.30
Identities = 22/90 (24%), Positives = 41/90 (45%)
Frame = +3
Query: 375 EDTTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNIT 554
E +S ED ND + D ++ S + D +S S S ES+ + +SS + +
Sbjct: 118 ESESSSED--NDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSS---E 172
Query: 555 DDKGENDKDNTLEDNEKTKKPSKSITDSST 644
+ D D++ ++ + S +DSS+
Sbjct: 173 SESSSEDNDSSSSSSDSESESSSEDSDSSS 202
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/128 (17%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Frame = +3
Query: 375 EDTTSVEDINNDKIQNVQDVKTTSQTLDVPTS-DSIEKSTVESTLQKENSSQTEKTVLNI 551
+ ++S D ++ D ++S + +S + + S+ S+ + E+SS+ + +
Sbjct: 181 DSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSS 240
Query: 552 TDDKGEN---DKDNTLEDNEKTKKPSKSITDSSTWGEYASYITYKDNEAVYTDPSSGQAY 722
+D + E+ D D++ ++ + S +DSS+ + + D+ ++ SS +
Sbjct: 241 SDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSD 300
Query: 723 TWNKTSNA 746
+ + +S++
Sbjct: 301 STSSSSDS 308
Score = 27.9 bits (59), Expect = 1.6
Identities = 31/129 (24%), Positives = 57/129 (44%)
Frame = +3
Query: 357 STYNQIEDTTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEK 536
S+ + E +S ED ND + D ++ S + D +S S S ES+ + +SS
Sbjct: 220 SSSSSSESESSSED--NDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSS--- 274
Query: 537 TVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWGEYASYITYKDNEAVYTDPSSGQ 716
N +D E+D + D+E S + SS+ + S + +D + +SG+
Sbjct: 275 ---NSSDS--EDDSSSDSSDSESESSSEDSDSTSSS-SDSDSSSSSEDGNSNTDTTTSGE 328
Query: 717 AYTWNKTSN 743
+ T++
Sbjct: 329 VSAQSSTNS 337
Score = 27.1 bits (57), Expect = 2.8
Identities = 18/94 (19%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Frame = +3
Query: 375 EDTTSVEDINNDKIQNVQDVKTTSQTLDVPTS-DSIEKSTVESTLQKENSSQTEKTVLNI 551
+ ++S D ++ D ++S + +S + + S+ S+ + E+SS+ + +
Sbjct: 127 DSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSS 186
Query: 552 TDDKGEN---DKDNTLEDNEKTKKPSKSITDSST 644
+D + E+ D D++ ++ + S +DSS+
Sbjct: 187 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSS 220
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 29.9 bits (64), Expect = 0.40
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +3
Query: 360 TYNQIEDT----TSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQ 527
TY+ + +T TSVED+N + I ++ D + D ++ S ST ++++ +S+Q
Sbjct: 107 TYSVMNETDSSSTSVEDVNKENILSLNDSCLIKLSDDEASNKSSRSSTPRNSIKSNSSNQ 166
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 29.5 bits (63), Expect = 0.53
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Frame = +3
Query: 375 EDTTSVEDINNDKIQNVQDVKTT---SQTLDVPT---SDSIEK--STVESTLQK----EN 518
E+ S + +N+DK++N V ++ ++ +D+ T +D EK S ST++ N
Sbjct: 109 EEDDSDDSVNSDKLENEGSVGSSIDENELVDLDTLLDNDQPEKNESNTASTIRPPWIGNN 168
Query: 519 SSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKS 626
T+K L +D ND ++ L D+ S S
Sbjct: 169 DHATDKENLLESDASSSNDSESELTDSADNMNESDS 204
>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 29.5 bits (63), Expect = 0.53
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = +3
Query: 432 VKTTSQTLDVPTSDSIEKSTVESTLQKENSS-----QTEKTVLNITDDKGEND 575
+KTT+ T P+ + S + +QK++SS +++ +N+TDDK N+
Sbjct: 84 LKTTTTTSSTPSKHADVGSQAQKQVQKQSSSGQRTFKSDNVNVNVTDDKIRNN 136
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 29.1 bits (62), Expect = 0.70
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +3
Query: 426 QDVKTTSQTLDVPTS-DSIEKSTVESTLQKENSSQTEKTVLN-ITDDKGENDKDNTLEDN 599
+++ S P+ +S +S L + NS+ N TDD GE++ TL +N
Sbjct: 464 KNISPESSRFGTPSDPNSSSQSLGNEVLSRPNSNSNSAESRNGETDDSGESETYFTLMNN 523
Query: 600 EKTKKPSKSITDSST 644
K +P S+ ++
Sbjct: 524 NKGVEPRASVASETS 538
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 0.93
Identities = 19/102 (18%), Positives = 45/102 (44%)
Frame = +3
Query: 438 TTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKP 617
+++ T P+S S S+ S+ +SS + + + + + ++ + +
Sbjct: 147 SSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 206
Query: 618 SKSITDSSTWGEYASYITYKDNEAVYTDPSSGQAYTWNKTSN 743
S IT SST ++S + + + + PSS ++ +S+
Sbjct: 207 SVPIT-SSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSS 247
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 447 QTLDVPTSDSIEKSTVESTLQ--KENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPS 620
QT+ P ++ + E T++ K+N + EK ++ + D+D+ L + +
Sbjct: 237 QTISKPRRSYVQNNKSEQTIKPSKQNKQKEEKKTISQGNKPNSRDEDSELSIDVPLSMLN 296
Query: 621 KSITDSS 641
+S+ ++S
Sbjct: 297 RSLANNS 303
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 2.8
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Frame = +3
Query: 384 TSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEK----STVESTLQKENSSQTEKTVLNI 551
TS D ND QNV + S + T D ++K S E + + S E+ +
Sbjct: 248 TSKPDFKNDVQQNVIEENNESSDNEYATFDRVKKDLFASDEEDDVSADQLSSYERDKARL 307
Query: 552 TDDKGENDKDNTLEDN-----EKTKK--PSKSITD 635
T E + +N + + E T K PS S+ D
Sbjct: 308 TQQIRELEAENVAKKSWTMMGEATSKGRPSNSLLD 342
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +3
Query: 393 EDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGEN 572
ED+ ND N + S ++ P + T +K ++++LN+ D+GE
Sbjct: 70 EDVENDTGMNTEYNDDNSSLVNTPRDSTTYAETNSPNTEKLAGRDDDRSLLNLI-DRGEI 128
Query: 573 D 575
D
Sbjct: 129 D 129
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/73 (21%), Positives = 36/73 (49%)
Frame = +3
Query: 417 QNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLED 596
+N++ +K +V ++ I ST+ S + ++ + +T+L +T +N+ +
Sbjct: 663 ENIEKLKQNDDHFEV--TEEIT-STINSKISEKQENNVAETILEVT--SSPKSSENSQKQ 717
Query: 597 NEKTKKPSKSITD 635
+E TKK + D
Sbjct: 718 SEITKKRGRDEED 730
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 422 CSRCENNITNFRCTYFRFHRKIYCRKYSAERKFITN*KN 538
C C+ N C Y +F+RKI KY+ + I N N
Sbjct: 30 CFECQKY--NENCVYRQFYRKIKRLKYNNDNSKIDNFSN 66
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 26.2 bits (55), Expect = 5.0
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = +3
Query: 468 SDSIEKSTVESTLQKENSSQTE-----KTVLNITDDKGENDKDNTLE--DNEKTKKPSK 623
+D I + T+E++LQKE +S + KT N T+ K E D + D PSK
Sbjct: 45 NDRISR-TIENSLQKETNSDNKIKKLSKTKSNPTNPKSEEDPSQICQSFDESNIITPSK 102
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 447 QTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNE 602
+ D+P+ K T + EN S T+ NIT + + TLE++E
Sbjct: 593 RNFDLPSDHVKAKKTRRAPKNSENDSATKTETANITSE-APTTSEVTLENSE 643
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/73 (23%), Positives = 33/73 (45%)
Frame = +3
Query: 375 EDTTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNIT 554
+D +ED+ +D+ Q+ K+ + EK E+ E + E N+
Sbjct: 755 KDDHELEDMIHDE---QQETKSGHEQFREHAMKEKEKKGKENENMGETTVDHENINSNVM 811
Query: 555 DDKGENDKDNTLE 593
D++GE KD+ ++
Sbjct: 812 DEQGEKQKDDVVD 824
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/70 (24%), Positives = 30/70 (42%)
Frame = +3
Query: 477 IEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSSTWGEY 656
+ KS E + +NS ++K +TD N + + TKK S+ + + +
Sbjct: 17 VPKSLKEESKNSQNSQNSQKIKRTLTDKNASNQE-------QGTKKLESSVGEQESATKR 69
Query: 657 ASYITYKDNE 686
A KDN+
Sbjct: 70 AKIENLKDNQ 79
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 26.2 bits (55), Expect = 5.0
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Frame = +3
Query: 405 NDKIQN--VQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNI--------- 551
N+ +QN ++K+ + ++ ++I + STL + T+ VL
Sbjct: 234 NNAMQNRTTSNIKSNASAIE-KNKETILNALNNSTLNENGHQDTQNEVLRDIVLEHPTAK 292
Query: 552 TDDKGENDKDNTLEDNEKTKKPSK 623
D GE++KDN ++ K+P +
Sbjct: 293 AQDTGESNKDNNTSTSKHKKRPKR 316
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 618 RVSLFFHYLQVYYPYHFHPYH 556
++ +F HYL YY H H H
Sbjct: 229 QLKMFVHYLPSYYHLHVHILH 249
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +3
Query: 456 DVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITD 635
++P D +++ + ++++ SS+ KT +N D+ N + NT K P K
Sbjct: 49 EIP-KDLLQRRVLPISVRRILSSR--KTFVNYLDET-PNSRYNTCVAKPSYKPPRKFCNV 104
Query: 636 SSTWGEYA 659
WG+YA
Sbjct: 105 CGYWGKYA 112
>SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 131
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 393 EDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVL 545
E + N+ + QDVK + L +S+ +EK ES L+++ +S ++ L
Sbjct: 62 EQLQNEILGFKQDVKLLNNVLVSYSSEELEKRFEESLLKEKATSMEMESKL 112
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.8 bits (54), Expect = 6.6
Identities = 18/81 (22%), Positives = 37/81 (45%)
Frame = +3
Query: 363 YNQIEDTTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTV 542
+ + D + ++ N+KIQ + + T ++PT +++ V LQ N++ E+ V
Sbjct: 284 FEEYRDKVATLELENEKIQTELNSWKSLITNELPTPEAVSNKLV--FLQNTNANLGER-V 340
Query: 543 LNITDDKGENDKDNTLEDNEK 605
++ + L NEK
Sbjct: 341 SSLESQLSNKPANQPLGANEK 361
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 6.6
Identities = 19/95 (20%), Positives = 40/95 (42%)
Frame = +3
Query: 402 NNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKD 581
N D + +D+K + DV +E +E+ + + + EK + D + +++
Sbjct: 4080 NEDHLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDE-PMQDFEDPLEEN 4138
Query: 582 NTLEDNEKTKKPSKSITDSSTWGEYASYITYKDNE 686
NTL+++ + S D E ++NE
Sbjct: 4139 NTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENE 4173
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 486 STVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSST 644
+TVE NSS V N + +ND DN DN++ + + +++T
Sbjct: 501 ATVERKEGGSNSSSNISNVANFDSAEDDNDNDN---DNDRDSNNNNNNNNTNT 550
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = +3
Query: 507 QKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSS 641
+KE++ + + N D+ E + ++++K + PSKS+ + S
Sbjct: 15 EKEDNVERQTKKYNFEIDEPEEQEKKDEKEDDKEESPSKSLEEIS 59
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 531 EKTVLNITDDKGENDKDNTLEDNEKTKKPS 620
E+ L+ ++ D DN+ E+N+ T +PS
Sbjct: 232 EEDYLSTDSEEFSEDSDNSSEENKDTNEPS 261
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 486 STVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKPSKSITDSST 644
+TVE NSS V N + +ND DN DN++ + + +++T
Sbjct: 501 ATVERKEGGSNSSSNISNVANFDSAEDDNDNDN---DNDRDSNNNNNNNNTNT 550
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/67 (20%), Positives = 32/67 (47%)
Frame = +3
Query: 276 PRTGFVIKLSEETVQKLAXXXXXXXXXSTYNQIEDTTSVEDINNDKIQNVQDVKTTSQTL 455
PR + ++++ +TV K N +ED + + D + D+I +++ + +
Sbjct: 91 PRNDY-LQVTPKTVDKSLLGPTPQLSRRVLNLLEDMSPIADSHVDQISDIKHNTSEISST 149
Query: 456 DVPTSDS 476
+PT+ S
Sbjct: 150 MIPTTPS 156
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 25.4 bits (53), Expect = 8.7
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = +3
Query: 438 TTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDDKGENDKDNTLEDNEKTKKP 617
T ++ ++ S +S + SS T T+ K DKDN L ++K
Sbjct: 491 TRNKHSEISAQSSSSLGVTKSLASEVYSSSTVDTI-----SKLNTDKDNYLIKSKKEPIQ 545
Query: 618 SKSITDSSTWGEYASYITYKD--NEAVYTDPS 707
KS++ +T + +S +Y D N + T+ S
Sbjct: 546 QKSVSSETTLVKPSSTSSYIDTTNNVLKTNSS 577
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 660 SYITYKDNEAVYTDPSSGQAYT 725
+Y+T KDN+ V PS G + T
Sbjct: 647 NYVTMKDNQVVSLHPSCGLSVT 668
>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 422 CSRCENNITNFRCTYFRFHRKIYCRKYSAERKFIT 526
CS C+ N + +RC R + C + + E K +T
Sbjct: 9 CSTCQKNASKYRCP--RCDSRFCCLECNLEHKRLT 41
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 8.7
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Frame = +3
Query: 402 NNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQ---TEKTVLNITDDKGEN 572
N+ + D+K ++T S +KST ST ++ SS+ T+ I +
Sbjct: 73 NSFSAETPVDLKKENETELANISGPHKKSTSTSTRKRARSSKKKATDSVSDKIDESVASY 132
Query: 573 DKDNTLEDNEKTKKPSKSITDSSTWGE 653
D L + ++KKP + S + E
Sbjct: 133 DSSTHLRRSSRSKKPVNYNSSSESESE 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,362
Number of Sequences: 5004
Number of extensions: 49111
Number of successful extensions: 215
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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