Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18p03f
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          30   0.020
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          30   0.020
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          30   0.020
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          30   0.020
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          30   0.020
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          30   0.020
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    30   0.020
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    28   0.11 
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          27   0.14 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   1.00 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.00 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.0  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   7.0  

>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 30.3 bits (65), Expect = 0.020
 Identities = 18/65 (27%), Positives = 34/65 (52%)
 Frame = +3

Query: 381 TTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDD 560
           TT+ +++  D I N +DV    +T +  +    E+  +++ L K N     +TVL +  +
Sbjct: 141 TTTSDELKRDII-NPEDVMLKRRTGE-GSKPIFEREEIKNILNKTNEITEHRTVLAVNIE 198

Query: 561 KGEND 575
           K EN+
Sbjct: 199 KSENE 203


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 30.3 bits (65), Expect = 0.020
 Identities = 18/65 (27%), Positives = 34/65 (52%)
 Frame = +3

Query: 381 TTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDD 560
           TT+ +++  D I N +DV    +T +  +    E+  +++ L K N     +TVL +  +
Sbjct: 141 TTTSDELKRDII-NPEDVMLKRRTGE-GSKPIFEREEIKNILNKTNEITEHRTVLAVNIE 198

Query: 561 KGEND 575
           K EN+
Sbjct: 199 KSENE 203


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 30.3 bits (65), Expect = 0.020
 Identities = 18/65 (27%), Positives = 34/65 (52%)
 Frame = +3

Query: 381 TTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDD 560
           TT+ +++  D I N +DV    +T +  +    E+  +++ L K N     +TVL +  +
Sbjct: 141 TTTSDELKRDII-NPEDVMLKRRTGE-GSKPIFEREEIKNILNKTNEITEHRTVLAVNIE 198

Query: 561 KGEND 575
           K EN+
Sbjct: 199 KSENE 203


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 30.3 bits (65), Expect = 0.020
 Identities = 18/65 (27%), Positives = 34/65 (52%)
 Frame = +3

Query: 381 TTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDD 560
           TT+ +++  D I N +DV    +T +  +    E+  +++ L K N     +TVL +  +
Sbjct: 141 TTTSDELKRDII-NPEDVMLKRRTGE-GSKPIFEREEIKNILNKTNEITEHRTVLAVNIE 198

Query: 561 KGEND 575
           K EN+
Sbjct: 199 KSENE 203


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 30.3 bits (65), Expect = 0.020
 Identities = 18/65 (27%), Positives = 34/65 (52%)
 Frame = +3

Query: 381 TTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDD 560
           TT+ +++  D I N +DV    +T +  +    E+  +++ L K N     +TVL +  +
Sbjct: 141 TTTSDELKRDII-NPEDVMLKRRTGE-GSKPIFEREEIKNILNKTNEITEHRTVLAVNIE 198

Query: 561 KGEND 575
           K EN+
Sbjct: 199 KSENE 203


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 30.3 bits (65), Expect = 0.020
 Identities = 18/65 (27%), Positives = 34/65 (52%)
 Frame = +3

Query: 381 TTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDD 560
           TT+ +++  D I N +DV    +T +  +    E+  +++ L K N     +TVL +  +
Sbjct: 141 TTTSDELKRDII-NPEDVMLKRRTGE-GSKPIFEREEIKNILNKTNEITEHRTVLAVNIE 198

Query: 561 KGEND 575
           K EN+
Sbjct: 199 KSENE 203


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 30.3 bits (65), Expect = 0.020
 Identities = 18/65 (27%), Positives = 34/65 (52%)
 Frame = +3

Query: 381 TTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDD 560
           TT+ +++  D I N +DV    +T +  +    E+  +++ L K N     +TVL +  +
Sbjct: 141 TTTSDELKRDII-NPEDVMLKRRTGE-GSKPIFEREEIKNILNKTNEITEHRTVLAVNIE 198

Query: 561 KGEND 575
           K EN+
Sbjct: 199 KSENE 203


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 18/67 (26%), Positives = 34/67 (50%)
 Frame = +3

Query: 375 EDTTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNIT 554
           + TT+  ++  D I N +DV    +T +  +    E+  +++ L K N  +   TVL + 
Sbjct: 131 KSTTTTVEVKRDII-NPEDVILIRRTGE-GSKPIFEREEIKNVLTKINKIKEHDTVLVVN 188

Query: 555 DDKGEND 575
            +K EN+
Sbjct: 189 IEKSENE 195


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = +3

Query: 381 TTSVEDINNDKIQNVQDVKTTSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVLNITDD 560
           TT+ +++    I N +DV    +T +  +    E+  +++ L K N     +TVL +  +
Sbjct: 141 TTTSDELKRGII-NPEDVMLKRRTGE-GSKPIFEREEIKNILNKTNEITEHRTVLAVNIE 198

Query: 561 KGEND 575
           K EN+
Sbjct: 199 KSENE 203


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 591 EDNEKTKKPSKSITDSSTWGEYASYITY 674
           ED E   + SKS T  S W  +A+ I +
Sbjct: 383 EDVENNSEVSKSRTKESAWRHFAAIIEW 410



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 553 LMIRVKMIRIIHLKIMKKQRNPPNLLL 633
           L+  +  +  +H ++     NPPN+LL
Sbjct: 291 LICHILCMSDLHWQLPHNSTNPPNILL 317


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
 Frame = +3

Query: 372  IEDTTSVEDINNDKIQN-VQDVKT-TSQTLDVPTSDSIEKSTVESTLQKENSSQTEKTVL 545
            I + TS+   NN    N   D K   SQ   V        +  ES+  K+  S  E    
Sbjct: 863  IPEQTSISHENNQPTMNKCSDRKRPASQATSVKAEPGSIMAMSESS--KKVLSPGELLSS 920

Query: 546  NITDDKGENDK-DNTLEDNEKTKKPSKSITDSSTWGEYASYITYKDNEA 689
             +++D G +   D +   N+K  K +  I D S+   + S   YK +E+
Sbjct: 921  CVSNDGGCSSLVDVSTPVNKKVYKQNDYIVDESSSSSFYSSFLYKSSES 969


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 570 NDKDNTLEDNEKTKKPSKSITDSSTWGEYASYITYKDNEAVYTD 701
           +DKD+   DNE  K   +    SS+  E  + I  + + ++ TD
Sbjct: 86  DDKDDDESDNENIKSQKEFPNSSSSDDERPNSIHQRASFSLNTD 129



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 552 TDDKGENDKDNTLEDNEKTKK--PSKSITD 635
           TDDK +++ DN   +N K++K  P+ S +D
Sbjct: 85  TDDKDDDESDN---ENIKSQKEFPNSSSSD 111


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 410 QNSKCSRCENNITNFRCTYFRFHRKIYCRKYSAERKFITN*KNSSEHN 553
           +  K  + EN+   +R T     R    R+ S ERK I++  N+  +N
Sbjct: 278 REQKSYKNENSYRKYRETSKERSRDRTERERSKERKIISSLSNNYNYN 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,773
Number of Sequences: 438
Number of extensions: 3111
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)