Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18p02f
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    28   1.5  
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.6  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   3.4  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    26   4.5  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   5.9  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    26   5.9  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    26   5.9  

>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -1

Query: 595 GLTRG-PATSNRQT*SSHFLSSYGNTVHRESGASIDRTHYGGT-TLEKLLDHTEFMSP 428
           G++ G P  S      +HFL     T  R +GASI   H G T TL     H+    P
Sbjct: 288 GMSNGSPEDSPLLVSPNHFLQRSSRTTIRRTGASIRTIHRGKTSTLSGNRSHSILQKP 345


>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 159

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 376 YPSQVKASSKDFYFVLS-LGT*IQCGLATFLMSSPHSVYGLSTRRFPY 516
           Y S  ++S+K  Y+VL+ L      G+AT   ++PHS+    +R+F Y
Sbjct: 108 YFSYEESSTKTVYYVLAHLNDNKWFGVATQKTNNPHSINVSLSRKFYY 155


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -1

Query: 553 SSHFLSSYGNTVH--RESGASIDRTHYGG 473
           SSHF+++YG +VH   E+    D  H  G
Sbjct: 397 SSHFIANYGGSVHHSNENTMQSDLQHQNG 425


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 667 PHPSNRNAFLLHGRNSQGGGSHP 599
           PHP N    LL G N+Q   S P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 21  IDINNPNAPTQLATWVL-CLKFYST 92
           +D+  P  PT +  W++ CL+  ST
Sbjct: 528 VDVEEPVGPTSILQWIIECLRSQST 552


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 87  STTDTHPSTRNAELVRGRNRQGDGTRP 167
           +TTD HP      ++ G N Q D   P
Sbjct: 93  ATTDPHPDNSKIVILMGSNFQNDANSP 119


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 597 CGWLPPPWLFLPCSRNAFRF 656
           C  +PP W+ L  +R+ FRF
Sbjct: 638 CKKIPPDWIKLSSTRSLFRF 657


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,301,725
Number of Sequences: 5004
Number of extensions: 75683
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)