Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV18p02f
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0730 + 5370575-5370761,5371395-5371438,5372057-5372204,537...    29   3.5  
03_01_0080 - 640806-641146,642484-642700,642795-642952,644057-64...    29   3.5  
01_06_0253 - 27901204-27901251,27901673-27901744,27901944-279020...    29   3.5  
12_01_0788 + 7192937-7192994,7193074-7193160,7193242-7193307,719...    28   6.1  
08_01_0675 - 5840867-5841253,5842699-5842997,5844022-5844202           28   6.1  
03_01_0575 + 4247431-4247489,4248475-4248547,4248792-4249229,425...    28   6.1  
03_02_0411 + 8217324-8218172                                           28   8.0  

>06_01_0730 +
           5370575-5370761,5371395-5371438,5372057-5372204,
           5372289-5372397,5373349-5373863,5374571-5374808,
           5375296-5375560,5375740-5375844,5375950-5376015,
           5376562-5377020,5377267-5377464,5378149-5378211
          Length = 798

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = -1

Query: 661 PSNRNAFLLHGRNSQGGGSHPHGLTRGPATSNRQT*SSHFLSSYGNTVHRESGASIDRTH 482
           PS R++  LH    Q GGSH +   RG       +   HF+S    +VHR +  S+ R  
Sbjct: 258 PSGRSSSHLH---VQSGGSHVNN-QRGNFVPGGPS-GRHFMSKNMQSVHRTALDSVHRGR 312

Query: 481 YGG 473
            GG
Sbjct: 313 SGG 315


>03_01_0080 -
           640806-641146,642484-642700,642795-642952,644057-645062
          Length = 573

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 70  YVLSSIVQRIPTLQPGTQNWFGAEIGRVMVPALADSQDVLAPSVYNRGSQIL 225
           YVL   V +I    P T    GA  G V+VP  +D   ++   +  RGS ++
Sbjct: 80  YVLWDAVYKISFPVPATPTETGAATGLVVVPGGSDHIYIMVAELSIRGSDVI 131


>01_06_0253 -
           27901204-27901251,27901673-27901744,27901944-27902030,
           27902484-27902574,27903706-27903769,27904354-27904461,
           27905124-27905181,27905813-27905956,27906307-27906372,
           27907227-27907299,27908439-27908500,27908923-27909000,
           27909124-27909229,27909317-27909483,27909961-27910048,
           27911204-27911313,27911833-27911928,27912354-27912461,
           27912568-27912711,27913850-27914065
          Length = 661

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/66 (33%), Positives = 31/66 (46%)
 Frame = -1

Query: 634 HGRNSQGGGSHPHGLTRGPATSNRQT*SSHFLSSYGNTVHRESGASIDRTHYGGTTLEKL 455
           HG  S G GSH  G   G   S +    S  L +YGN  ++++ A +D    G    E +
Sbjct: 26  HGSGSSGTGSHTSGGGGGWRGSRQYQRRSDAL-AYGNR-YQKAAALVDLAEDGVGIPEDV 83

Query: 454 LDHTEF 437
           L+ T F
Sbjct: 84  LNDTRF 89


>12_01_0788 +
           7192937-7192994,7193074-7193160,7193242-7193307,
           7193447-7193555,7194522-7194785,7194919-7195006,
           7195085-7195708,7196017-7196140,7196195-7196337,
           7196434-7196649,7196781-7196873,7196952-7197032,
           7197120-7197504,7197599-7197636
          Length = 791

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 102 HPSTRNAELVRGRNRQGDGTRPCGLTRR--PSTIGIQQRVPDFITHRPLSKFSW 257
           H ST N++ VRG+N+     RP G         IGI  R      H P+ +  W
Sbjct: 457 HVSTSNSKKVRGKNKSKVERRPIGENHELLSREIGIVTRY-----HAPIKRIGW 505


>08_01_0675 - 5840867-5841253,5842699-5842997,5844022-5844202
          Length = 288

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 63  WVLCLKFYSTTDTHPSTRNAELV 131
           WVLC  FY T  T PS  + E V
Sbjct: 163 WVLCRVFYKTRQTIPSPSSEEAV 185


>03_01_0575 +
           4247431-4247489,4248475-4248547,4248792-4249229,
           4252122-4253339
          Length = 595

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 325 PFSRQLHFFGIIIFKCIYPSQVKA 396
           PFS Q+ FF  ++F+ ++PS+  A
Sbjct: 441 PFSEQILFFAGVLFRHLFPSKTSA 464


>03_02_0411 + 8217324-8218172
          Length = 282

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 135 GRNRQGDGTRPCGLTRRPS--TIGIQQR 212
           GR R+GDG  PC  T R S  T+ +  R
Sbjct: 82  GRGREGDGGGPCAATARCSAATVAVSPR 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,965,664
Number of Sequences: 37544
Number of extensions: 553109
Number of successful extensions: 1195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)