Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV18p02f
(691 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC108907-1|AAI08908.2| 917|Homo sapiens TJP3 protein protein. 31 3.9
BC108906-1|AAI08907.1| 938|Homo sapiens TJP3 protein protein. 31 3.9
AC005954-1|AAC72274.1| 952|Homo sapiens ZO-3 [Homo sapiens] pro... 31 3.9
BC060780-1|AAH60780.1| 1085|Homo sapiens ALPK1 protein protein. 31 5.1
AY044164-1|AAK94675.1| 1244|Homo sapiens lymphocyte alpha-kinase... 31 5.1
AK131090-1|BAC85140.1| 853|Homo sapiens FLJ00302 protein protein. 31 5.1
AL359540-8|CAI21719.1| 546|Homo sapiens mutY homolog (E. coli) ... 30 6.8
AL359540-5|CAI21717.1| 546|Homo sapiens mutY homolog (E. coli) ... 30 6.8
AL359540-4|CAI21715.1| 291|Homo sapiens mutY homolog (E. coli) ... 30 6.8
AF527839-1|AAM78555.1| 546|Homo sapiens mutY homolog protein. 30 6.8
AB032924-1|BAA89340.1| 532|Homo sapiens hMYHbeta1 protein. 30 6.8
AB032920-1|BAA89336.1| 546|Homo sapiens hMYHalpha1 protein. 30 6.8
BC117129-1|AAI17130.1| 1030|Homo sapiens MMS19 nucleotide excisi... 30 8.9
BC080532-1|AAH80532.1| 871|Homo sapiens MMS19 protein protein. 30 8.9
BC006575-1|AAH06575.2| 803|Homo sapiens MMS19L protein protein. 30 8.9
BC002692-1|AAH02692.1| 692|Homo sapiens Unknown (protein for IM... 30 8.9
AY974244-1|AAX59033.1| 1030|Homo sapiens MMS19-like (MET18 homol... 30 8.9
AL359388-1|CAI14189.1| 1030|Homo sapiens MMS19-like (MET18 homol... 30 8.9
AL355490-23|CAI40792.1| 885|Homo sapiens MMS19-like (MET18 homo... 30 8.9
AL355490-1|CAI40770.1| 1030|Homo sapiens MMS19-like (MET18 homol... 30 8.9
AK056581-1|BAB71223.1| 375|Homo sapiens protein ( Homo sapiens ... 30 8.9
AK027710-1|BAB55315.1| 774|Homo sapiens protein ( Homo sapiens ... 30 8.9
AJ306408-1|CAC29239.1| 1030|Homo sapiens MMS19 protein protein. 30 8.9
AF357881-1|AAK70402.1| 1030|Homo sapiens transcriptional coactiv... 30 8.9
AF319947-1|AAK52668.1| 1030|Homo sapiens MMS19 protein. 30 8.9
AF007151-1|AAC19154.1| 341|Homo sapiens unknown protein. 30 8.9
>BC108907-1|AAI08908.2| 917|Homo sapiens TJP3 protein protein.
Length = 917
Score = 31.1 bits (67), Expect = 3.9
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -1
Query: 673 RLPHPSNRNAFLLHGRNSQGGGSHPHGL 590
R P P R HGR S GGGS +GL
Sbjct: 147 RRPRPGRRGRAGSHGRRSPGGGSEANGL 174
>BC108906-1|AAI08907.1| 938|Homo sapiens TJP3 protein protein.
Length = 938
Score = 31.1 bits (67), Expect = 3.9
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -1
Query: 673 RLPHPSNRNAFLLHGRNSQGGGSHPHGL 590
R P P R HGR S GGGS +GL
Sbjct: 166 RRPRPGRRGRAGSHGRRSPGGGSEANGL 193
>AC005954-1|AAC72274.1| 952|Homo sapiens ZO-3 [Homo sapiens]
protein.
Length = 952
Score = 31.1 bits (67), Expect = 3.9
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -1
Query: 673 RLPHPSNRNAFLLHGRNSQGGGSHPHGL 590
R P P R HGR S GGGS +GL
Sbjct: 166 RRPRPGRRGRAGSHGRRSPGGGSEANGL 193
>BC060780-1|AAH60780.1| 1085|Homo sapiens ALPK1 protein protein.
Length = 1085
Score = 30.7 bits (66), Expect = 5.1
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -2
Query: 681 SYNDCPTPQTETHFCYTAETARVVVATHTDSQEVLPPVTVRPNLHIFCR 535
S NDCP H C E + + T D + PVT + LH F +
Sbjct: 312 SSNDCPPELKNLHLCEAKEAFEIGLLTKRDDE----PVTGKQELHSFVK 356
>AY044164-1|AAK94675.1| 1244|Homo sapiens lymphocyte alpha-kinase
protein.
Length = 1244
Score = 30.7 bits (66), Expect = 5.1
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -2
Query: 681 SYNDCPTPQTETHFCYTAETARVVVATHTDSQEVLPPVTVRPNLHIFCR 535
S NDCP H C E + + T D + PVT + LH F +
Sbjct: 312 SSNDCPPELKNLHLCEAKEAFEIGLLTKRDDE----PVTGKQELHSFVK 356
>AK131090-1|BAC85140.1| 853|Homo sapiens FLJ00302 protein protein.
Length = 853
Score = 30.7 bits (66), Expect = 5.1
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -2
Query: 681 SYNDCPTPQTETHFCYTAETARVVVATHTDSQEVLPPVTVRPNLHIFCR 535
S NDCP H C E + + T D + PVT + LH F +
Sbjct: 143 SSNDCPPELKNLHLCEAKEAFEIGLLTKRDDE----PVTGKQELHSFVK 187
>AL359540-8|CAI21719.1| 546|Homo sapiens mutY homolog (E. coli)
protein.
Length = 546
Score = 30.3 bits (65), Expect = 6.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 165 PCGLTRRPSTIGIQQRVPDFITHRPLSKFSWFL*TLCSWY 284
P GL R+P + +Q V + R +++ + F +L SWY
Sbjct: 62 PAGLARQPEEVVLQASVSSYHLFRDVAEVTAFRGSLLSWY 101
>AL359540-5|CAI21717.1| 546|Homo sapiens mutY homolog (E. coli)
protein.
Length = 546
Score = 30.3 bits (65), Expect = 6.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 165 PCGLTRRPSTIGIQQRVPDFITHRPLSKFSWFL*TLCSWY 284
P GL R+P + +Q V + R +++ + F +L SWY
Sbjct: 62 PAGLARQPEEVVLQASVSSYHLFRDVAEVTAFRGSLLSWY 101
>AL359540-4|CAI21715.1| 291|Homo sapiens mutY homolog (E. coli)
protein.
Length = 291
Score = 30.3 bits (65), Expect = 6.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 165 PCGLTRRPSTIGIQQRVPDFITHRPLSKFSWFL*TLCSWY 284
P GL R+P + +Q V + R +++ + F +L SWY
Sbjct: 48 PAGLARQPEEVVLQASVSSYHLFRDVAEVTAFRGSLLSWY 87
>AF527839-1|AAM78555.1| 546|Homo sapiens mutY homolog protein.
Length = 546
Score = 30.3 bits (65), Expect = 6.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 165 PCGLTRRPSTIGIQQRVPDFITHRPLSKFSWFL*TLCSWY 284
P GL R+P + +Q V + R +++ + F +L SWY
Sbjct: 62 PAGLARQPEEVVLQASVSSYHLFRDVAEVTAFRGSLLSWY 101
>AB032924-1|BAA89340.1| 532|Homo sapiens hMYHbeta1 protein.
Length = 532
Score = 30.3 bits (65), Expect = 6.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 165 PCGLTRRPSTIGIQQRVPDFITHRPLSKFSWFL*TLCSWY 284
P GL R+P + +Q V + R +++ + F +L SWY
Sbjct: 48 PAGLARQPEEVVLQASVSSYHLFRDVAEVTAFRGSLLSWY 87
>AB032920-1|BAA89336.1| 546|Homo sapiens hMYHalpha1 protein.
Length = 546
Score = 30.3 bits (65), Expect = 6.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 165 PCGLTRRPSTIGIQQRVPDFITHRPLSKFSWFL*TLCSWY 284
P GL R+P + +Q V + R +++ + F +L SWY
Sbjct: 62 PAGLARQPEEVVLQASVSSYHLFRDVAEVTAFRGSLLSWY 101
>BC117129-1|AAI17130.1| 1030|Homo sapiens MMS19 nucleotide excision
repair homolog (S. cerevisiae) protein.
Length = 1030
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 15 GSIDINNPNAPTQLATWVLCLKFYSTTDTHPS 110
G ++ N + PTQ + + CL+ S THPS
Sbjct: 536 GESNLTNGDEPTQCSRHLCCLQALSAVSTHPS 567
>BC080532-1|AAH80532.1| 871|Homo sapiens MMS19 protein protein.
Length = 871
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 15 GSIDINNPNAPTQLATWVLCLKFYSTTDTHPS 110
G ++ N + PTQ + + CL+ S THPS
Sbjct: 377 GESNLTNGDEPTQCSRHLCCLQALSAVSTHPS 408
>BC006575-1|AAH06575.2| 803|Homo sapiens MMS19L protein protein.
Length = 803
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 15 GSIDINNPNAPTQLATWVLCLKFYSTTDTHPS 110
G ++ N + PTQ + + CL+ S THPS
Sbjct: 309 GESNLTNGDEPTQCSRHLCCLQALSAVSTHPS 340
>BC002692-1|AAH02692.1| 692|Homo sapiens Unknown (protein for
IMAGE:3605877) protein.
Length = 692
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 15 GSIDINNPNAPTQLATWVLCLKFYSTTDTHPS 110
G ++ N + PTQ + + CL+ S THPS
Sbjct: 198 GESNLTNGDEPTQCSRHLCCLQALSAVSTHPS 229
>AY974244-1|AAX59033.1| 1030|Homo sapiens MMS19-like (MET18 homolog,
S. cerevisiae) protein.
Length = 1030
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 15 GSIDINNPNAPTQLATWVLCLKFYSTTDTHPS 110
G ++ N + PTQ + + CL+ S THPS
Sbjct: 536 GESNLTNGDEPTQCSRHLCCLQALSAVSTHPS 567
>AL359388-1|CAI14189.1| 1030|Homo sapiens MMS19-like (MET18 homolog,
S. cerevisiae) protein.
Length = 1030
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 15 GSIDINNPNAPTQLATWVLCLKFYSTTDTHPS 110
G ++ N + PTQ + + CL+ S THPS
Sbjct: 536 GESNLTNGDEPTQCSRHLCCLQALSAVSTHPS 567
>AL355490-23|CAI40792.1| 885|Homo sapiens MMS19-like (MET18
homolog, S. cerevisiae) protein.
Length = 885
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 15 GSIDINNPNAPTQLATWVLCLKFYSTTDTHPS 110
G ++ N + PTQ + + CL+ S THPS
Sbjct: 391 GESNLTNGDEPTQCSRHLCCLQALSAVSTHPS 422
>AL355490-1|CAI40770.1| 1030|Homo sapiens MMS19-like (MET18 homolog,
S. cerevisiae) protein.
Length = 1030
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 15 GSIDINNPNAPTQLATWVLCLKFYSTTDTHPS 110
G ++ N + PTQ + + CL+ S THPS
Sbjct: 536 GESNLTNGDEPTQCSRHLCCLQALSAVSTHPS 567
>AK056581-1|BAB71223.1| 375|Homo sapiens protein ( Homo sapiens
cDNA FLJ32019 fis, clone NTONG1000098. ).
Length = 375
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 15 GSIDINNPNAPTQLATWVLCLKFYSTTDTHPS 110
G ++ N + PTQ + + CL+ S THPS
Sbjct: 172 GESNLTNGDEPTQCSRHLCCLQALSAVSTHPS 203
>AK027710-1|BAB55315.1| 774|Homo sapiens protein ( Homo sapiens
cDNA FLJ14804 fis, clone NT2RP4001638, weakly similar to
DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19. ).
Length = 774
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 15 GSIDINNPNAPTQLATWVLCLKFYSTTDTHPS 110
G ++ N + PTQ + + CL+ S THPS
Sbjct: 280 GESNLTNGDEPTQCSRHLCCLQALSAVSTHPS 311
>AJ306408-1|CAC29239.1| 1030|Homo sapiens MMS19 protein protein.
Length = 1030
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 15 GSIDINNPNAPTQLATWVLCLKFYSTTDTHPS 110
G ++ N + PTQ + + CL+ S THPS
Sbjct: 536 GESNLTNGDEPTQCSRHLCCLQALSAVSTHPS 567
>AF357881-1|AAK70402.1| 1030|Homo sapiens transcriptional
coactivator MMS19 protein.
Length = 1030
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 15 GSIDINNPNAPTQLATWVLCLKFYSTTDTHPS 110
G ++ N + PTQ + + CL+ S THPS
Sbjct: 536 GESNLTNGDEPTQCSRHLCCLQALSAVSTHPS 567
>AF319947-1|AAK52668.1| 1030|Homo sapiens MMS19 protein.
Length = 1030
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 15 GSIDINNPNAPTQLATWVLCLKFYSTTDTHPS 110
G ++ N + PTQ + + CL+ S THPS
Sbjct: 536 GESNLTNGDEPTQCSRHLCCLQALSAVSTHPS 567
>AF007151-1|AAC19154.1| 341|Homo sapiens unknown protein.
Length = 341
Score = 29.9 bits (64), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 15 GSIDINNPNAPTQLATWVLCLKFYSTTDTHPS 110
G ++ N + PTQ + + CL+ S THPS
Sbjct: 98 GESNLTNGDEPTQCSRHLCCLQALSAVSTHPS 129
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,007,796
Number of Sequences: 237096
Number of extensions: 3111651
Number of successful extensions: 9563
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 9263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9563
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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